Ss1.1-rese36c_d17.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCTCCGTTCCTCTCTATCAAGGATTCCTCATCATTGGGTACTCCACCATTTACACCATGT TTCCCGTGTTTTCTCTGGTTCTGGACAAAGATGTCAAGTCAGAAGTCGCCATGCTGTACC CCGAGCTCTACAAGGATCTCCTCAAGGGGCGGCCGTTGTCCTACAAGACATTCTTAATCT GGGTTTTGATCAGCATCTATCAAGGGAGCACCATCATGTACGGGGCGCTGCTGCTCTTTG AGTCGGAGTTCGTGCACATCGTGGCGATTTCCTTCACGTCGCTGATCCTCACGGAGCTGC TGATGGTGGCCTTGACCATCCAGACCTGGCACTGGCTTATGACGGTGGCGGAGCTGCTCA GCCTGGCCTGCTACATTGCTTCCCTGGTGTTCCTGCATGAGTTTATTGACGTGTACTTCA TCGCCACCTTGTCGTTCCTGTGGAAGGTGTCTGTCATCACGCTGGTCAGCTGCCTGCCCC TCTACGTCCTCAAGTACCTGCGACGACGGTTCTCCCCTCCCAGCTACTCGAAGCTCACGT CCTAGGCCGTGTGCTGGGCAGAGGACCCGGTCTTTCCCGGCGGGCGGAGTTCAAGTTGCG TTTCTACGACCCGCCGTCTGTGGATTGTGCAGCAGCGGCTCCCCGGCGCAGCGCCCCCCA CCCCGTGAAGAGGCTCTGCGCGTCCTCGGGGCCCCAACACCCGGGAGACAGGAGGGGGGG CTCCTCGGCGGTGCCCACGCCAGCCTGGCTGCACCTCTGGGGATGCGGAGTCGGGTGAAC GTGACCGCATGAACACTGGTGACTCGGCCGAGAGATTTGCGTATGGGGTCACTGTGCAGG CTTCCTCGTGACTTGAATTTTGTTGTCCTGTGATAAAAGTGGCTGTCTCGTGGAAGATGG TAGCGGGCGTTTCGTTGTTGGTGTTTTCAGCAACCCTAATGTGTGTGCCCTTTTTGCGTC TTTCTGCTCTTCAAAAGCTGGTTTCAGAGCAAGATGAAGCTCTTGGTGTAGGTTTGGGGG GAAAGACAGTGATGTTTGGTAAAAAGTTAACTAGATGATAATCTCAACTTGGAAACGCTA AGTATCCTCTTTAAGGCAGCCTTGCTCCCTGAAATGGTGCTGGATTCCCAGGATCACAGA AAAGTGAACGAGGAGAGCGCGCGC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCTCCGTTCCTCTCTATCAAGGATTCCTCATCATTGGGTACTCCACCATTTACACCATGT TTCCCGTGTTTTCTCTGGTTCTGGACAAAGATGTCAAGTCAGAAGTCGCCATGCTGTACC CCGAGCTCTACAAGGATCTCCTCAAGGGGCGGCCGTTGTCCTACAAGACATTCTTAATCT GGGTTTTGATCAGCATCTATCAAGGGAGCACCATCATGTACGGGGCGCTGCTGCTCTTTG AGTCGGAGTTCGTGCACATCGTGGCGATTTCCTTCACGTCGCTGATCCTCACGGAGCTGC TGATGGTGGCCTTGACCATCCAGACCTGGCACTGGCTTATGACGGTGGCGGAGCTGCTCA GCCTGGCCTGCTACATTGCTTCCCTGGTGTTCCTGCATGAGTTTATTGACGTGTACTTCA TCGCCACCTTGTCGTTCCTGTGGAAGGTGTCTGTCATCACGCTGGTCAGCTGCCTGCCCC TCTACGTCCTCAAGTACCTGCGACGACGGTTCTCCCCTCCCAGCTACTCGAAGCTCACGT CCTAGGCCGTGTGCTGGGCAGAGGACCCGGTCTTTCCCGGCGGGCGGAGTTCAAGTTGCG TTTCTACGACCCGCCGTCTGTGGATTGTGCAGCAGCGGCTCCCCGGCGCAGCGCCCCCCA CCCCGTGAAGAGGCTCTGCGCGTCCTCGGGGCCCCAACACCCGGGAGACAGGAGGGGGGG CTCCTCGGCGGTGCCCACGCCAGCCTGGCTGCACCTCTGGGGATGCGGAGTCGGGTGAAC GTGACCGCATGAACACTGGTGACTCGGCCGAGAGATTTGCGTATGGGGTCACTGTGCAGG CTTCCTCGTGACTTGAATTTTGTTGTCCTGTGATAAAAGTGGCTGTCTCGTGGAAGATGG TAGCGGGCGTTTCGTTGTTGGTGTTTTCAGCAACCCTAATGTGTGTGCCCTTTTTGCGTC TTTCTGCTCTTCAAAAGCTGGTTTCAGAGCAAGATGAAGCTCTTGGTGTAGGTTTGGGGG GAAAGACAGTGATGTTTGGTAAAAAGTTAACTAGATGATAATCTCAACTTGGAAACGCTA AGTATCCTCTTTAAGGCAGCCTTGCTCCCTGAAATGGTGCTGGATTCCCAGGATCACAGA AAAGTGAACGAGGAGAGCGCGCGC |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 27 entry(ies) | More info |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
| 37-147, gnl|bosTau2|chr13 (58495553-58495663) | |
| 37-147, gnl|canFam2|chr24 (40786566-40786710) | |
| 37-147, gnl|danRer3|chr6 (10561975-10561846) | |
| 37-147, gnl|dasNov1|scaffold_192293 (2116-2228) | |
| 37-147, gnl|echTel1|scaffold_289359 (6516-6622) | |
| 37-147, gnl|fr1|chrUn (40071685-40071556) | |
| 37-147, gnl|galGal2|chr20 (12760404-12760276) | |
| 37-147, gnl|hg17|chr20 (49658450-49658592) | |
| 37-147, gnl|Hg17|chr20 (49658573-49658463) | |
| 37-147, gnl|loxAfr1|scaffold_222 (199518-199402) | |
| 37-147, gnl|mm7|chr2 (168432531-168432655) | |
| 37-147, gnl|Mm7|chr2 (168432645-168432535) | |
| 37-147, gnl|monDom2|scaffold_1 (163829571-163829707) | |
| 37-147, gnl|oryCun1|scaffold_173233 (44880-44762) | |
| 37-147, gnl|panTro1|chr21 (52422479-52422617) | |
| 37-147, gnl|rheMac2|chr10 (12855876-12855738) | |
| 37-147, gnl|rn3|chr18 (77702860-77702980) | |
| 37-147, gnl|tetNig1|chr9 (9760706-9760822) | |
| 37-147, gnl|xenTro1|scaffold_165 (1716195-1716307) | |
| 203-406, gnl|bosTau2|chr13 (58498963-58499166) | |
| 203-406, gnl|Hg17|chr20 (49654968-49654765) | |
| 203-406, gnl|Mm7|chr2 (168430360-168430157) | |
| 408-654, gnl|bosTau2|chr13 (58500429-58500680) | |
| 408-654, gnl|Hg17|chr20 (49651294-49651017) | |
| 408-654, gnl|Mm7|chr2 (168427563-168427286) | |
| 670-1144, gnl|bosTau2|chr13 (58500669-58501136) | |
| 670-1144, gnl|Hg17|chr20 (49651028-49650533) |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 37-147, gnl|bosTau2|chr13 (58495553-58495663) | |
| 37-147, gnl|canFam2|chr24 (40786566-40786710) | |
| 37-147, gnl|danRer3|chr6 (10561975-10561846) | |
| 37-147, gnl|dasNov1|scaffold_192293 (2116-2228) | |
| 37-147, gnl|echTel1|scaffold_289359 (6516-6622) | |
| 37-147, gnl|fr1|chrUn (40071685-40071556) | |
| 37-147, gnl|galGal2|chr20 (12760404-12760276) | |
| 37-147, gnl|hg17|chr20 (49658450-49658592) | |
| 37-147, gnl|Hg17|chr20 (49658573-49658463) | |
| 37-147, gnl|loxAfr1|scaffold_222 (199518-199402) | |
| 37-147, gnl|mm7|chr2 (168432531-168432655) | |
| 37-147, gnl|Mm7|chr2 (168432645-168432535) | |
| 37-147, gnl|monDom2|scaffold_1 (163829571-163829707) | |
| 37-147, gnl|oryCun1|scaffold_173233 (44880-44762) | |
| 37-147, gnl|panTro1|chr21 (52422479-52422617) | |
| 37-147, gnl|rheMac2|chr10 (12855876-12855738) | |
| 37-147, gnl|rn3|chr18 (77702860-77702980) | |
| 37-147, gnl|tetNig1|chr9 (9760706-9760822) | |
| 37-147, gnl|xenTro1|scaffold_165 (1716195-1716307) | |
| 203-406, gnl|bosTau2|chr13 (58498963-58499166) | |
| 203-406, gnl|Hg17|chr20 (49654968-49654765) | |
| 203-406, gnl|Mm7|chr2 (168430360-168430157) | |
| 408-654, gnl|bosTau2|chr13 (58500429-58500680) | |
| 408-654, gnl|Hg17|chr20 (49651294-49651017) | |
| 408-654, gnl|Mm7|chr2 (168427563-168427286) | |
| 670-1144, gnl|bosTau2|chr13 (58500669-58501136) | |
| 670-1144, gnl|Hg17|chr20 (49651028-49650533) |
| Expressed library(ies): 7 entry(ies) | More info |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
| ill (0.175593) | |
| nmm (0.132802) | |
| ese (0.126502) | |
| eep (0.122564) | |
| cly (0.120642) | |
| ecc (0.115035) | |
| jej (0.0989218) |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ill (0.175593) | |
| nmm (0.132802) | |
| ese (0.126502) | |
| eep (0.122564) | |
| cly (0.120642) | |
| ecc (0.115035) | |
| jej (0.0989218) |