Non-Coding RNA Search

Ss1.1-rese36c_d7.5

Sequence:


               
               AGGAGCCCTTCCTGTCCCATGCCAGCTCCCTGCTCTCTCTGCACGTGGACCTGGGGCCTT
CCATCCTGGACGACGTCCTCCAGATCATGGACCAGGACCTGGGCCACCTGCAGATCCCCA
CATAGGACCCGATGCTGGCCAAGCTGGGTGCCCAGGCTGGGCTGAACGCCAGAGGCAGGG
GGTGGACACTGCCCTGGCCTAGAAGTCCGGGTCCCAAGGTCCCACCTGTGTGGTTGCTGG
CCAGTGATGTCTCACTTTGAGCCTTTATTTCTCTCCCTCCCACCTTCTACCCGTGGGCAG
AGAGGCCTCATTGCTGTCCCCTAGGCCCCATGAGGACATGTGCAGCCCAAAGTGCCTCTT
CATCTTGGGCCCCCAGCACCCCCACTGCCAGCTGCTCCTCAGAGCCCTTGGACGAAGGCT
CTGCTGAGGCGGACTCTGCTTTTGGCCTCCCTCTGCCTCAGCCCCTGCTGGGGGGCGGGG
GCAGCACAGCCAGATGGACTTCCAGCTCCGTGCTGAGGACTGAGGACATGGCATCAGCGA
CTGACGTCCCTCTGCCCCACCCTCCCCCATGACCAGGGGATTCTGGTTGCAATAAAACAT
GCTGCTGCTGGTAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGAGCCCTTCCTGTCCCATGCCAGCTCCCTGCTCTCTCTGCACGTGGACCTGGGGCCTT
CCATCCTGGACGACGTCCTCCAGATCATGGACCAGGACCTGGGCCACCTGCAGATCCCCA
CATAGGACCCGATGCTGGCCAAGCTGGGTGCCCAGGCTGGGCTGAACGCCAGAGGCAGGG
GGTGGACACTGCCCTGGCCTAGAAGTCCGGGTCCCAAGGTCCCACCTGTGTGGTTGCTGG
CCAGTGATGTCTCACTTTGAGCCTTTATTTCTCTCCCTCCCACCTTCTACCCGTGGGCAG
AGAGGCCTCATTGCTGTCCCCTAGGCCCCATGAGGACATGTGCAGCCCAAAGTGCCTCTT
CATCTTGGGCCCCCAGCACCCCCACTGCCAGCTGCTCCTCAGAGCCCTTGGACGAAGGCT
CTGCTGAGGCGGACTCTGCTTTTGGCCTCCCTCTGCCTCAGCCCCTGCTGGGGGGCGGGG
GCAGCACAGCCAGATGGACTTCCAGCTCCGTGCTGAGGACTGAGGACATGGCATCAGCGA
CTGACGTCCCTCTGCCCCACCCTCCCCCATGACCAGGGGATTCTGGTTGCAATAAAACAT
GCTGCTGCTGGTAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|12834302|dbj|BAB22858.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|12834302|dbj|BAB22858.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-279, - strand, RNAz p=0.856193

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-279, - strand, RNAz p=0.856193

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-613, gnl|bosTau2|chr29 (34448053-34448685)
               

               
               1-613, gnl|Hg17|chr11 (64845454-64846139)
               

               
               1-613, gnl|Mm7|chr19 (5812961-5812367)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-613, gnl|bosTau2|chr29 (34448053-34448685)
               

               
               1-613, gnl|Hg17|chr11 (64845454-64846139)
               

               
               1-613, gnl|Mm7|chr19 (5812961-5812367)

Expressed library(ies): 10 entry(ies)

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Expressed library(ies): 10 entry(ies)

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               amn (0.417711)
               

               
               nms (0.213858)
               

               
               mcp (0.170648)
               

               
               fhi (0.169578)
               

               
               csp (0.161186)
               

               
               cag (0.151194)
               

               
               hyp (0.142837)
               

               
               nca (0.136874)
               

               
               ese (0.126502)
               

               
               jca (0.11396)

Expressed library(ies): 10 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               amn (0.417711)
               

               
               nms (0.213858)
               

               
               mcp (0.170648)
               

               
               fhi (0.169578)
               

               
               csp (0.161186)
               

               
               cag (0.151194)
               

               
               hyp (0.142837)
               

               
               nca (0.136874)
               

               
               ese (0.126502)
               

               
               jca (0.11396)

	1-613, gnl\|bosTau2\|chr29 (34448053-34448685)
	1-613, gnl\|Hg17\|chr11 (64845454-64846139)
	1-613, gnl\|Mm7\|chr19 (5812961-5812367)

	amn (0.417711)
	nms (0.213858)
	mcp (0.170648)
	fhi (0.169578)
	csp (0.161186)
	cag (0.151194)
	hyp (0.142837)
	nca (0.136874)
	ese (0.126502)
	jca (0.11396)