Ss1.1-rese36c_h12.5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTAACAGACGAAGGTCAAGTGTACGCTTGGGGTGCCAATTCTTACGGCCAGTTGGGCACT GGCAATAAAAGTAACCAGTCCTATCCTACTCCTGTCATTGTGGAAAAGGACAGAATCATA GAGATTGCAGCCTGCCACTCTGCCCACACGTCAGCTGCCAAGACGCAGGGAGGCCACGTG TACATGTGGGGCCAGTGCCGGGGCCAGTCGGTGACCCTGCCCCACCTCACCCACTTCTCC TCCACCGACGACGTGTTCGCCTGCTTTGCCACCCCTGCCGTCACGTGGCGCCTCCTGTCT GTGGAACCTGACGACCACCTCACAGTGGCTGAGTCCCTGAAGAGGGAATTCGACAACCCC AACACTGCAGACCTGAAGTTTCTGGTGGATGGAAAGTACATTTATGCACATAAAGTCCTT CTGAAAATTAGGTGTGAGCATTTTCGCTCTTCCTTGGAAGGCAATGAGGATGAGATTGTA GAAATGAGTGAATTTTCGTATCCTGTTTACCGGGCCTTCCTGGAGTACCTGTACACAGAC AGCATCAGCCTGTCCCCCGAGGAGGCAGTAGGATTGCTAGATTTGGCTACATTTTATAGA GAAAATCGTTTGAAAAAACTCTGCCAACAGACAATCAAGCAAGGAATTTGTGAGGAGAAC GCCATTGCACTGCTCTCAGCTGCCGTGAAGTATGATGCTCAGGACTTAGAAGAATTCTGC TTCAGATTTTGCGTAAACCATTTGACTGTGGTGACACAGACTTCAGGCTTTGCAGAAATG GACCATGATCTCTTGAAGAACTTTATCAGCAAAGCAAGCAGAGTTGGAGCCTTTAAAAAC TGATCCTCATCTGTATTTTAAGATTTTCATTTTCCCTGAAAAAAAACTTTTTTTTAATGG TATTTACGATGAGTTACATTTGGCTGAATACCCATGTTCTGCTGAATGGAGGATGGTGGT CAGTCCTCCCCATCTTTTGAAATCCAGTCTTTCTAGAAGGCATTAAATGCTCTGAACAGA TGTGACTGAGCTCAAGGGAAAAAATGTAAATGTCTTAATCTACCATTTCCTCTTTCAAGT TGCCGAGTCGGAGGTGTTTGGTACATGGGTTCTGGCCCAATTCCTACAGTCAGCAGGCTG ATGCCGCACAGAGAGCTTGATGCTCGATGGGGAATGCTCTCGTACCACACTTGCAGCATC CAGCTCAGTGCCTTGCATATAGTAGGCACTCACCTTACTATAAATCTTGAGCACGCCCTG AGAACAGCTTTACTTGTGGGACACAGGATGAAGGAATAAGTTCCACAAGACGTTTTAAAC AACTGAGACTCGGCGTTCCCGTTGTGGTGCAGTGGTTAATGAATCTGACTAGGAACCATG AGGTTGCGGGTTCGATCCCTGGCCTTGCTCAGTGGGTTAAGGATCTGGCGTTGCCGTGAG GTGTGGTGTAGGTTGCAGACACAACCGTGAGCTGTGGTGTAGGTTGCTGTGGCTCTGGCA TAGGCTAGTGGCTACAGCTCTGATTTGACCCCTAGCCTAGGAACCTCCATATGCTGCAGG AGCAGCCCAGGAAATGGCAAAAAGACAAAAAAACAAAAAAAAACGGAGACTCAAACACTT CTGGTAAATCATTCTGAGAAATAGTGGCTAATTTGGAGCATTAATTAGAATTCACAAAAG GCCTTGCCAATTAAATTGTTCAAGACCCAAGGGCTCATTTCAGTTCTCTGCTCTGAGTCA TTAATTTCTCATAAGGGATTATTGAATATGAAGTACTGTCTTAGAATGAATGTTATTTCT GGGTTCATCTGCCTTACATAATTACATGTCTTTTGTGTTGAGATTTCCCTCTATAAGTAA AAATGATTTTGTGTTTTTCTTGTGGTTGACTTTTGTGTGACTATAAAATAGATCTCTTAA CTTGGCATAGTGTAATTATAAAGTACTAGCTGAAAAGGAACTAATATTTACATTTCATGG GCAGCACTGGTTAAGAATGAGCTAAATGTGTGCTTTTTAGATCAAGTTACCCAACTGCTA ATGAGAAACTGGAACAGGATGTGGGAGGCAGCTCAGTGTCTCCTATTGTGTATTGCACAG TATGATACCATGTAAATAAAACGCTTTTAAAATTAGAAAATTTGTTTTGACACCAAACTG TTTGATAATAAAGTGCTTATTTGCTGATAATAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTAACAGACGAAGGTCAAGTGTACGCTTGGGGTGCCAATTCTTACGGCCAGTTGGGCACT GGCAATAAAAGTAACCAGTCCTATCCTACTCCTGTCATTGTGGAAAAGGACAGAATCATA GAGATTGCAGCCTGCCACTCTGCCCACACGTCAGCTGCCAAGACGCAGGGAGGCCACGTG TACATGTGGGGCCAGTGCCGGGGCCAGTCGGTGACCCTGCCCCACCTCACCCACTTCTCC TCCACCGACGACGTGTTCGCCTGCTTTGCCACCCCTGCCGTCACGTGGCGCCTCCTGTCT GTGGAACCTGACGACCACCTCACAGTGGCTGAGTCCCTGAAGAGGGAATTCGACAACCCC AACACTGCAGACCTGAAGTTTCTGGTGGATGGAAAGTACATTTATGCACATAAAGTCCTT CTGAAAATTAGGTGTGAGCATTTTCGCTCTTCCTTGGAAGGCAATGAGGATGAGATTGTA GAAATGAGTGAATTTTCGTATCCTGTTTACCGGGCCTTCCTGGAGTACCTGTACACAGAC AGCATCAGCCTGTCCCCCGAGGAGGCAGTAGGATTGCTAGATTTGGCTACATTTTATAGA GAAAATCGTTTGAAAAAACTCTGCCAACAGACAATCAAGCAAGGAATTTGTGAGGAGAAC GCCATTGCACTGCTCTCAGCTGCCGTGAAGTATGATGCTCAGGACTTAGAAGAATTCTGC TTCAGATTTTGCGTAAACCATTTGACTGTGGTGACACAGACTTCAGGCTTTGCAGAAATG GACCATGATCTCTTGAAGAACTTTATCAGCAAAGCAAGCAGAGTTGGAGCCTTTAAAAAC TGATCCTCATCTGTATTTTAAGATTTTCATTTTCCCTGAAAAAAAACTTTTTTTTAATGG TATTTACGATGAGTTACATTTGGCTGAATACCCATGTTCTGCTGAATGGAGGATGGTGGT CAGTCCTCCCCATCTTTTGAAATCCAGTCTTTCTAGAAGGCATTAAATGCTCTGAACAGA TGTGACTGAGCTCAAGGGAAAAAATGTAAATGTCTTAATCTACCATTTCCTCTTTCAAGT TGCCGAGTCGGAGGTGTTTGGTACATGGGTTCTGGCCCAATTCCTACAGTCAGCAGGCTG ATGCCGCACAGAGAGCTTGATGCTCGATGGGGAATGCTCTCGTACCACACTTGCAGCATC CAGCTCAGTGCCTTGCATATAGTAGGCACTCACCTTACTATAAATCTTGAGCACGCCCTG AGAACAGCTTTACTTGTGGGACACAGGATGAAGGAATAAGTTCCACAAGACGTTTTAAAC AACTGAGACTCGGCGTTCCCGTTGTGGTGCAGTGGTTAATGAATCTGACTAGGAACCATG AGGTTGCGGGTTCGATCCCTGGCCTTGCTCAGTGGGTTAAGGATCTGGCGTTGCCGTGAG GTGTGGTGTAGGTTGCAGACACAACCGTGAGCTGTGGTGTAGGTTGCTGTGGCTCTGGCA TAGGCTAGTGGCTACAGCTCTGATTTGACCCCTAGCCTAGGAACCTCCATATGCTGCAGG AGCAGCCCAGGAAATGGCAAAAAGACAAAAAAACAAAAAAAAACGGAGACTCAAACACTT CTGGTAAATCATTCTGAGAAATAGTGGCTAATTTGGAGCATTAATTAGAATTCACAAAAG GCCTTGCCAATTAAATTGTTCAAGACCCAAGGGCTCATTTCAGTTCTCTGCTCTGAGTCA TTAATTTCTCATAAGGGATTATTGAATATGAAGTACTGTCTTAGAATGAATGTTATTTCT GGGTTCATCTGCCTTACATAATTACATGTCTTTTGTGTTGAGATTTCCCTCTATAAGTAA AAATGATTTTGTGTTTTTCTTGTGGTTGACTTTTGTGTGACTATAAAATAGATCTCTTAA CTTGGCATAGTGTAATTATAAAGTACTAGCTGAAAAGGAACTAATATTTACATTTCATGG GCAGCACTGGTTAAGAATGAGCTAAATGTGTGCTTTTTAGATCAAGTTACCCAACTGCTA ATGAGAAACTGGAACAGGATGTGGGAGGCAGCTCAGTGTCTCCTATTGTGTATTGCACAG TATGATACCATGTAAATAAAACGCTTTTAAAATTAGAAAATTTGTTTTGACACCAAACTG TTTGATAATAAAGTGCTTATTTGCTGATAATAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 52 entry(ies) | More info |
| Aligned organism(s): 52 entry(ies) | Help | Less info |
| 112-304, gnl|bosTau2|chr12 (10243012-10242820) | |
| 112-304, gnl|Hg17|chr13 (47975053-47974861) | |
| 112-304, gnl|Mm7|chr14 (67855389-67855581) | |
| 430-572, gnl|bosTau2|chr12 (10240560-10240418) | |
| 430-572, gnl|canFam2|chr22 (5160624-5160465) | |
| 430-572, gnl|canFam2|chr22 (5160619-5160488) | |
| 430-572, gnl|danRer3|chr1 (47970774-47970954) | |
| 430-572, gnl|danRer3|chr24 (25383305-25383185) | |
| 430-572, gnl|dasNov1|scaffold_38011 (2595-2754) | |
| 430-572, gnl|dasNov1|scaffold_38011 (2600-2748) | |
| 430-572, gnl|echTel1|scaffold_237461 (14000-13811) | |
| 430-572, gnl|echTel1|scaffold_237461 (13979-13847) | |
| 430-572, gnl|fr1|chrUn (54703479-54703633) | |
| 430-572, gnl|fr1|chrUn (54703483-54703619) | |
| 430-572, gnl|galGal2|chr1 (160986128-160986294) | |
| 430-572, gnl|galGal2|chr1 (160986146-160986277) | |
| 430-572, gnl|hg17|chr10 (90535602-90535738) | |
| 430-572, gnl|hg17|chr13 (47971745-47971933) | |
| 430-572, gnl|Hg17|chr13 (47971899-47971757) | |
| 430-572, gnl|mm7|chr14 (67858862-67858676) | |
| 430-572, gnl|mm7|chr14 (67858846-67858710) | |
| 430-572, gnl|Mm7|chr14 (67858706-67858848) | |
| 430-572, gnl|monDom2|scaffold_15 (58686390-58686229) | |
| 430-572, gnl|monDom2|scaffold_30 (28851006-28850874) | |
| 430-572, gnl|oryCun1|scaffold_207289 (31067-31250) | |
| 430-572, gnl|oryCun1|scaffold_207289 (31082-31218) | |
| 430-572, gnl|panTro1|chr14_random (14028483-14028671) | |
| 430-572, gnl|panTro1|chr8 (92224892-92225028) | |
| 430-572, gnl|rheMac2|chr9 (88362636-88362776) | |
| 430-572, gnl|rheMac2|chr9 (88362639-88362775) | |
| 430-572, gnl|rn3|chr15 (53829980-53829794) | |
| 430-572, gnl|rn3|chr15 (53829964-53829828) | |
| 430-572, gnl|tetNig1|chr16 (5858602-5858441) | |
| 430-572, gnl|tetNig1|chr16 (5858596-5858460) | |
| 430-572, gnl|xenTro1|scaffold_133 (286175-286338) | |
| 430-572, gnl|xenTro1|scaffold_133 (286188-286322) | |
| 701-1327, gnl|bosTau2|chr12 (10230867-10230208) | |
| 701-1327, gnl|Hg17|chr13 (47962390-47961710) | |
| 701-1327, gnl|Mm7|chr14 (67864170-67865226) | |
| 1583-2199, gnl|bosTau2|chr12 (10230234-10229607) | |
| 1583-2199, gnl|dasNov1|scaffold_3926 (128204-128705) | |
| 1583-2199, gnl|echTel1|scaffold_237461 (23790-23255) | |
| 1583-2199, gnl|hg17|chr13 (47961017-47961560) | |
| 1583-2199, gnl|Hg17|chr13 (47961746-47961096) | |
| 1583-2199, gnl|loxAfr1|scaffold_45722 (639-137) | |
| 1583-2199, gnl|mm7|chr14 (67865837-67865370) | |
| 1583-2199, gnl|Mm7|chr14 (67865199-67865768) | |
| 1583-2199, gnl|monDom2|scaffold_15 (58704744-58704215) | |
| 1583-2199, gnl|oryCun1|scaffold_207289 (23202-23709) | |
| 1583-2199, gnl|panTro1|chr14_random (14016897-14017437) | |
| 1583-2199, gnl|rheMac2|chr17 (27280397-27280947) | |
| 1583-2199, gnl|rn3|chr15 (53837101-53836610) |
| Aligned organism(s): 52 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 112-304, gnl|bosTau2|chr12 (10243012-10242820) | |
| 112-304, gnl|Hg17|chr13 (47975053-47974861) | |
| 112-304, gnl|Mm7|chr14 (67855389-67855581) | |
| 430-572, gnl|bosTau2|chr12 (10240560-10240418) | |
| 430-572, gnl|canFam2|chr22 (5160624-5160465) | |
| 430-572, gnl|canFam2|chr22 (5160619-5160488) | |
| 430-572, gnl|danRer3|chr1 (47970774-47970954) | |
| 430-572, gnl|danRer3|chr24 (25383305-25383185) | |
| 430-572, gnl|dasNov1|scaffold_38011 (2595-2754) | |
| 430-572, gnl|dasNov1|scaffold_38011 (2600-2748) | |
| 430-572, gnl|echTel1|scaffold_237461 (14000-13811) | |
| 430-572, gnl|echTel1|scaffold_237461 (13979-13847) | |
| 430-572, gnl|fr1|chrUn (54703479-54703633) | |
| 430-572, gnl|fr1|chrUn (54703483-54703619) | |
| 430-572, gnl|galGal2|chr1 (160986128-160986294) | |
| 430-572, gnl|galGal2|chr1 (160986146-160986277) | |
| 430-572, gnl|hg17|chr10 (90535602-90535738) | |
| 430-572, gnl|hg17|chr13 (47971745-47971933) | |
| 430-572, gnl|Hg17|chr13 (47971899-47971757) | |
| 430-572, gnl|mm7|chr14 (67858862-67858676) | |
| 430-572, gnl|mm7|chr14 (67858846-67858710) | |
| 430-572, gnl|Mm7|chr14 (67858706-67858848) | |
| 430-572, gnl|monDom2|scaffold_15 (58686390-58686229) | |
| 430-572, gnl|monDom2|scaffold_30 (28851006-28850874) | |
| 430-572, gnl|oryCun1|scaffold_207289 (31067-31250) | |
| 430-572, gnl|oryCun1|scaffold_207289 (31082-31218) | |
| 430-572, gnl|panTro1|chr14_random (14028483-14028671) | |
| 430-572, gnl|panTro1|chr8 (92224892-92225028) | |
| 430-572, gnl|rheMac2|chr9 (88362636-88362776) | |
| 430-572, gnl|rheMac2|chr9 (88362639-88362775) | |
| 430-572, gnl|rn3|chr15 (53829980-53829794) | |
| 430-572, gnl|rn3|chr15 (53829964-53829828) | |
| 430-572, gnl|tetNig1|chr16 (5858602-5858441) | |
| 430-572, gnl|tetNig1|chr16 (5858596-5858460) | |
| 430-572, gnl|xenTro1|scaffold_133 (286175-286338) | |
| 430-572, gnl|xenTro1|scaffold_133 (286188-286322) | |
| 701-1327, gnl|bosTau2|chr12 (10230867-10230208) | |
| 701-1327, gnl|Hg17|chr13 (47962390-47961710) | |
| 701-1327, gnl|Mm7|chr14 (67864170-67865226) | |
| 1583-2199, gnl|bosTau2|chr12 (10230234-10229607) | |
| 1583-2199, gnl|dasNov1|scaffold_3926 (128204-128705) | |
| 1583-2199, gnl|echTel1|scaffold_237461 (23790-23255) | |
| 1583-2199, gnl|hg17|chr13 (47961017-47961560) | |
| 1583-2199, gnl|Hg17|chr13 (47961746-47961096) | |
| 1583-2199, gnl|loxAfr1|scaffold_45722 (639-137) | |
| 1583-2199, gnl|mm7|chr14 (67865837-67865370) | |
| 1583-2199, gnl|Mm7|chr14 (67865199-67865768) | |
| 1583-2199, gnl|monDom2|scaffold_15 (58704744-58704215) | |
| 1583-2199, gnl|oryCun1|scaffold_207289 (23202-23709) | |
| 1583-2199, gnl|panTro1|chr14_random (14016897-14017437) | |
| 1583-2199, gnl|rheMac2|chr17 (27280397-27280947) | |
| 1583-2199, gnl|rn3|chr15 (53837101-53836610) |
| Expressed library(ies): 31 entry(ies) | More info |
| Expressed library(ies): 31 entry(ies) | Help | Less info |
| pro (0.512033) | |
| sug (0.509165) | |
| spc (0.453463) | |
| gul (0.355177) | |
| ste (0.270416) | |
| eru (0.240096) | |
| cbe (0.239234) | |
| ece (0.229305) | |
| tes (0.207814) | |
| hea (0.204499) | |
| aor (0.195274) | |
| col (0.195008) | |
| nlu (0.191681) | |
| sag (0.182715) | |
| sin (0.174948) | |
| rec (0.17307) | |
| nco (0.161734) | |
| tbr (0.154178) | |
| isp (0.150376) | |
| fat (0.147427) | |
| lin (0.145603) | |
| hyp (0.142837) | |
| lnt (0.142308) | |
| nmm (0.132802) | |
| ova (0.129132) | |
| ese (0.126502) | |
| tra (0.123092) | |
| cly (0.120642) | |
| ebs (0.118301) | |
| med (0.116252) | |
| jej (0.0989218) |
| Expressed library(ies): 31 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pro (0.512033) | |
| sug (0.509165) | |
| spc (0.453463) | |
| gul (0.355177) | |
| ste (0.270416) | |
| eru (0.240096) | |
| cbe (0.239234) | |
| ece (0.229305) | |
| tes (0.207814) | |
| hea (0.204499) | |
| aor (0.195274) | |
| col (0.195008) | |
| nlu (0.191681) | |
| sag (0.182715) | |
| sin (0.174948) | |
| rec (0.17307) | |
| nco (0.161734) | |
| tbr (0.154178) | |
| isp (0.150376) | |
| fat (0.147427) | |
| lin (0.145603) | |
| hyp (0.142837) | |
| lnt (0.142308) | |
| nmm (0.132802) | |
| ova (0.129132) | |
| ese (0.126502) | |
| tra (0.123092) | |
| cly (0.120642) | |
| ebs (0.118301) | |
| med (0.116252) | |
| jej (0.0989218) |