Non-Coding RNA Search

Ss1.1-rese36c_m16.5

Sequence:


               
               TAGGCAGATCATTAATGATGAGCTAGCCAAATGTGGGCATACTATTACAGGGAAAGTTTA
AAGGTCTGATAACGTGAAATAGGTTTTTAGGAGAATTCATCTACTTAGACTTTTTAAATG
CCTGCCATAAATGAAATTGAAATGGTAGAATGGCTGACCACAGCAATGACCAGCCCTCAT
TAGGGCCCTGGATGATTTTTTTGGTCTAATAACGCATGCTAGTGTTGATGTTTTTTGGTC
AAGAGGGTATGAACAGGAAGAATTAATGCAGCAGGCTTTATTTTAAATGCCGATTCACAT
TACTCTGTTCAAGCTGCGTTGAGATGTTAAACTGGCTTACTATAGACTTTGTAAAAATGG
CTCCAGAAGAGTAACAAACTGAAATCTTTGAGATCACACAGGTTGGAAATATGTACATAA
CTGCACAAGGTGTCAATTCTGCTATACAGTGCAGTTTTAGTCAGTTTTAGTTGCATAGGT
TTCCATTGTATTTATAGTCTGTTTATGCTAAATCTGGCCAAAGATGAGCATTGTCCACCA
CTAAAATGCCTCTGCCACTTTGAATTCTGTGCTAATTTTGTGGCCAGAATGCAGTGATCA
AAACACTCAATCTTTTTACAGTGGCATAGGAAGATGGCAAAAATTTCCTAAAGTGCAATA
GATTTTCAAGTGTATTGTGCCTTGTTCTAAAACTTTTATTAAGTAGGTGCACTTGACAGT
ATTGAGGTCATTTGTTATGGTGCTATTTCAATTAGTCTAGGTTTAGGCCCTTGTACATTT
TGCCCATAACTTTTTACAAAGTACTTCTTTTATTGCACATTCAGAGAATTTTATATATAT
GTCTTGTGTGCGTGTCCTTAAACTTCCAATCTTATTTTGTCTCTTGGAGATTGTTGAACG
CAGCTTGTCTAGGAAGGGGATGGGACTAGATTCTGAAATTTATTTGGGACCATGGGAATG
ATAGTTGGGAAGAAAACTATTTGCACACGACAGATTTCTAGATACTTTTTGCTGCTAGTT
TTATGTAATATTTATTGAACATTTTGACAAATATTTATTTTTGTAAGCCTAAAAGTGATT
CTTTGAAAGTTTAAAGAAACTTGACCAAAAGACAGTACAAAAACACTGGCACTTGAATGT
TGAATGTCACCGTATGCGTGAAATTATATATTTCGGGGTAGTGTGAGCTTTTAATGTTAA
GTCATATTAAACTCTTAAGTCAAATTAAGCAGACCCGGCATTGGCAGTGTAGCCATAACT
TTCTGATGTTAGTAAAAACAAAATTGGCGACTTTAAATTAAATCATGCCAAGGTTTTGAT
ACACTTGTCTTAAGATATTAATGAAACACTTCAAAACACTGATATGAAGTGTCCAGATTC
TCAGATGTTTGTTGCGTGAGTTTTGTTTAGTTGTGTGTATTTTTTTTTTTTCAGTGAATG
TCTGGCACATTGCAATCCTGAAACATGTGGTTATCTTTGTTGTATTGGCATAATCAGTGA
CTTGTACATTCAGCGATAGCATTTGAGCAAGTTTTATCAGCAAGCAATATTTTCAGTTAA
TAAAGTTTCAAAAATCACATAAGAATGGATTTAAACTTGCTGAATGTAAAGATTGAACCT
CAAGTCACTGTAGCTTTAGTAATTGCTTATTGTATTAGTTTAGATGCTAGCACTGCATGT
GCTGTGCATATTCTGATTTTATTAAAATAAAAAGTTGAACTGCACAGTCTTTTGTTGTTG
TCAATTGTGGTTTATTATTAGAGGTGAAAATAAAGTTGTGCTCTTGCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAGGCAGATCATTAATGATGAGCTAGCCAAATGTGGGCATACTATTACAGGGAAAGTTTA
AAGGTCTGATAACGTGAAATAGGTTTTTAGGAGAATTCATCTACTTAGACTTTTTAAATG
CCTGCCATAAATGAAATTGAAATGGTAGAATGGCTGACCACAGCAATGACCAGCCCTCAT
TAGGGCCCTGGATGATTTTTTTGGTCTAATAACGCATGCTAGTGTTGATGTTTTTTGGTC
AAGAGGGTATGAACAGGAAGAATTAATGCAGCAGGCTTTATTTTAAATGCCGATTCACAT
TACTCTGTTCAAGCTGCGTTGAGATGTTAAACTGGCTTACTATAGACTTTGTAAAAATGG
CTCCAGAAGAGTAACAAACTGAAATCTTTGAGATCACACAGGTTGGAAATATGTACATAA
CTGCACAAGGTGTCAATTCTGCTATACAGTGCAGTTTTAGTCAGTTTTAGTTGCATAGGT
TTCCATTGTATTTATAGTCTGTTTATGCTAAATCTGGCCAAAGATGAGCATTGTCCACCA
CTAAAATGCCTCTGCCACTTTGAATTCTGTGCTAATTTTGTGGCCAGAATGCAGTGATCA
AAACACTCAATCTTTTTACAGTGGCATAGGAAGATGGCAAAAATTTCCTAAAGTGCAATA
GATTTTCAAGTGTATTGTGCCTTGTTCTAAAACTTTTATTAAGTAGGTGCACTTGACAGT
ATTGAGGTCATTTGTTATGGTGCTATTTCAATTAGTCTAGGTTTAGGCCCTTGTACATTT
TGCCCATAACTTTTTACAAAGTACTTCTTTTATTGCACATTCAGAGAATTTTATATATAT
GTCTTGTGTGCGTGTCCTTAAACTTCCAATCTTATTTTGTCTCTTGGAGATTGTTGAACG
CAGCTTGTCTAGGAAGGGGATGGGACTAGATTCTGAAATTTATTTGGGACCATGGGAATG
ATAGTTGGGAAGAAAACTATTTGCACACGACAGATTTCTAGATACTTTTTGCTGCTAGTT
TTATGTAATATTTATTGAACATTTTGACAAATATTTATTTTTGTAAGCCTAAAAGTGATT
CTTTGAAAGTTTAAAGAAACTTGACCAAAAGACAGTACAAAAACACTGGCACTTGAATGT
TGAATGTCACCGTATGCGTGAAATTATATATTTCGGGGTAGTGTGAGCTTTTAATGTTAA
GTCATATTAAACTCTTAAGTCAAATTAAGCAGACCCGGCATTGGCAGTGTAGCCATAACT
TTCTGATGTTAGTAAAAACAAAATTGGCGACTTTAAATTAAATCATGCCAAGGTTTTGAT
ACACTTGTCTTAAGATATTAATGAAACACTTCAAAACACTGATATGAAGTGTCCAGATTC
TCAGATGTTTGTTGCGTGAGTTTTGTTTAGTTGTGTGTATTTTTTTTTTTTCAGTGAATG
TCTGGCACATTGCAATCCTGAAACATGTGGTTATCTTTGTTGTATTGGCATAATCAGTGA
CTTGTACATTCAGCGATAGCATTTGAGCAAGTTTTATCAGCAAGCAATATTTTCAGTTAA
TAAAGTTTCAAAAATCACATAAGAATGGATTTAAACTTGCTGAATGTAAAGATTGAACCT
CAAGTCACTGTAGCTTTAGTAATTGCTTATTGTATTAGTTTAGATGCTAGCACTGCATGT
GCTGTGCATATTCTGATTTTATTAAAATAAAAAGTTGAACTGCACAGTCTTTTGTTGTTG
TCAATTGTGGTTTATTATTAGAGGTGAAAATAAAGTTGTGCTCTTGCC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|52789349|gb|AAH83059.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|52789349|gb|AAH83059.1|

Predicted RNA structure(s): 6 entry(ies)

More info

Predicted RNA structure(s): 6 entry(ies)

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               80-198, - strand, RNAz p=0.787647
               

               
               499-657, - strand, RNAz p=0.963437
               

               
               898-1017, - strand, RNAz p=0.771324
               

               
               1138-1256, - strand, RNAz p=0.699713
               

               
               1496-1611, - strand, RNAz p=0.870653
               

               
               1652-1788, + strand, RNAz p=0.920248

Predicted RNA structure(s): 6 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               80-198, - strand, RNAz p=0.787647
               

               
               499-657, - strand, RNAz p=0.963437
               

               
               898-1017, - strand, RNAz p=0.771324
               

               
               1138-1256, - strand, RNAz p=0.699713
               

               
               1496-1611, - strand, RNAz p=0.870653
               

               
               1652-1788, + strand, RNAz p=0.920248

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_001356, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_001356, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1788, gnl|bosTau2|chrX (28791006-28789223)
               

               
               1-1788, gnl|Hg17|chrX (40963991-40965774)
               

               
               1-1788, gnl|Mm7|chrX (11725418-11727199)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1788, gnl|bosTau2|chrX (28791006-28789223)
               

               
               1-1788, gnl|Hg17|chrX (40963991-40965774)
               

               
               1-1788, gnl|Mm7|chrX (11725418-11727199)

Expressed library(ies): 45 entry(ies)

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Expressed library(ies): 45 entry(ies)

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               liv (1.02399)
               

               
               kid (0.908147)
               

               
               bfe (0.899146)
               

               
               mgp (0.692042)
               

               
               isp (0.601504)
               

               
               fat (0.58971)
               

               
               sin (0.524843)
               

               
               tbr (0.462535)
               

               
               amn (0.417711)
               

               
               ste (0.405625)
               

               
               bla (0.373042)
               

               
               fty (0.351679)
               

               
               fbs (0.350693)
               

               
               mga (0.32041)
               

               
               sme (0.305437)
               

               
               lin (0.291206)
               

               
               ldo (0.291008)
               

               
               spl (0.286369)
               

               
               hyp (0.285673)
               

               
               nmm (0.265604)
               

               
               ret (0.257467)
               

               
               thg (0.253582)
               

               
               ese (0.253004)
               

               
               tra (0.246184)
               

               
               cbe (0.239234)
               

               
               med (0.232504)
               

               
               nms (0.213858)
               

               
               jej (0.197844)
               

               
               mgm (0.180343)
               

               
               ill (0.175593)
               

               
               nje (0.16592)
               

               
               cag (0.151194)
               

               
               lun (0.150489)
               

               
               lnt (0.142308)
               

               
               ssp (0.13552)
               

               
               pla (0.133672)
               

               
               lyg (0.133103)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               eep (0.122564)
               

               
               clu (0.119646)
               

               
               pgl (0.118483)
               

               
               cbl (0.114797)
               

               
               cty (0.10408)
               

               
               eje (0.0988338)

Expressed library(ies): 45 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               liv (1.02399)
               

               
               kid (0.908147)
               

               
               bfe (0.899146)
               

               
               mgp (0.692042)
               

               
               isp (0.601504)
               

               
               fat (0.58971)
               

               
               sin (0.524843)
               

               
               tbr (0.462535)
               

               
               amn (0.417711)
               

               
               ste (0.405625)
               

               
               bla (0.373042)
               

               
               fty (0.351679)
               

               
               fbs (0.350693)
               

               
               mga (0.32041)
               

               
               sme (0.305437)
               

               
               lin (0.291206)
               

               
               ldo (0.291008)
               

               
               spl (0.286369)
               

               
               hyp (0.285673)
               

               
               nmm (0.265604)
               

               
               ret (0.257467)
               

               
               thg (0.253582)
               

               
               ese (0.253004)
               

               
               tra (0.246184)
               

               
               cbe (0.239234)
               

               
               med (0.232504)
               

               
               nms (0.213858)
               

               
               jej (0.197844)
               

               
               mgm (0.180343)
               

               
               ill (0.175593)
               

               
               nje (0.16592)
               

               
               cag (0.151194)
               

               
               lun (0.150489)
               

               
               lnt (0.142308)
               

               
               ssp (0.13552)
               

               
               pla (0.133672)
               

               
               lyg (0.133103)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               eep (0.122564)
               

               
               clu (0.119646)
               

               
               pgl (0.118483)
               

               
               cbl (0.114797)
               

               
               cty (0.10408)
               

               
               eje (0.0988338)

	80-198, - strand, RNAz p=0.787647
	499-657, - strand, RNAz p=0.963437
	898-1017, - strand, RNAz p=0.771324
	1138-1256, - strand, RNAz p=0.699713
	1496-1611, - strand, RNAz p=0.870653
	1652-1788, + strand, RNAz p=0.920248

	1-1788, gnl\|bosTau2\|chrX (28791006-28789223)
	1-1788, gnl\|Hg17\|chrX (40963991-40965774)
	1-1788, gnl\|Mm7\|chrX (11725418-11727199)

	liv (1.02399)
	kid (0.908147)
	bfe (0.899146)
	mgp (0.692042)
	isp (0.601504)
	fat (0.58971)
	sin (0.524843)
	tbr (0.462535)
	amn (0.417711)
	ste (0.405625)
	bla (0.373042)
	fty (0.351679)
	fbs (0.350693)
	mga (0.32041)
	sme (0.305437)
	lin (0.291206)
	ldo (0.291008)
	spl (0.286369)
	hyp (0.285673)
	nmm (0.265604)
	ret (0.257467)
	thg (0.253582)
	ese (0.253004)
	tra (0.246184)
	cbe (0.239234)
	med (0.232504)
	nms (0.213858)
	jej (0.197844)
	mgm (0.180343)
	ill (0.175593)
	nje (0.16592)
	cag (0.151194)
	lun (0.150489)
	lnt (0.142308)
	ssp (0.13552)
	pla (0.133672)
	lyg (0.133103)
	ova (0.129132)
	sug (0.127291)
	eep (0.122564)
	clu (0.119646)
	pgl (0.118483)
	cbl (0.114797)
	cty (0.10408)
	eje (0.0988338)