Non-Coding RNA Search

Ss1.1-rese36c_m2.5

Sequence:


               
               TGTCCCTCCCTGAGCACAAGCTGGCAAGTCACTCCGGCAGACTCCAAGGCCAGCTGTGTC
CTGGTCCTGCCAGTTCCTCTAATGTCGGGACCAGAAAACGCGTGAGCTTTGTTTCTGTCT
TCACTTCACTAGCCTTAGTGCAGCAAAGGGTCTCTGCCAAAGCTGTGGAAGGAAGGGTGT
AAACATTACAAAGCGTTTCTCGCATTCCAATGAAACACAGTCGACAAACCTCACTTCTCA
GGCCTCACGCCCGCAAATCATTCATTACATTCAGGTCTGCACCGCCCCAGTGTGTGCAAG
ATTTTAAGTGTCCTCAGTGGGAAAGTGGGTACAGTAAATGCATAGTCTCCTACCTCGCAG
GATTGTTGTGAAGATCTCAGATCCATCCCGTACTGTTGTTCCTTTCTCAGGGTCGAGGAA
GGCAAGCCAGGGCTTTCGCCCGTGGTGACCTTCCGAGCTCGCCTTACAGCGTCTTTGCAG
CACTGCCTTAGCTTCGTAGGGCCTCTCCTGACAGTCGAGAGCCCTTTAGACAGAAAGACG
CCTGTGCCCTGGCAAGAACTCCTGGCTACAGAAACACACTGTGCATCTAGTGCGTGTGTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGTCCCTCCCTGAGCACAAGCTGGCAAGTCACTCCGGCAGACTCCAAGGCCAGCTGTGTC
CTGGTCCTGCCAGTTCCTCTAATGTCGGGACCAGAAAACGCGTGAGCTTTGTTTCTGTCT
TCACTTCACTAGCCTTAGTGCAGCAAAGGGTCTCTGCCAAAGCTGTGGAAGGAAGGGTGT
AAACATTACAAAGCGTTTCTCGCATTCCAATGAAACACAGTCGACAAACCTCACTTCTCA
GGCCTCACGCCCGCAAATCATTCATTACATTCAGGTCTGCACCGCCCCAGTGTGTGCAAG
ATTTTAAGTGTCCTCAGTGGGAAAGTGGGTACAGTAAATGCATAGTCTCCTACCTCGCAG
GATTGTTGTGAAGATCTCAGATCCATCCCGTACTGTTGTTCCTTTCTCAGGGTCGAGGAA
GGCAAGCCAGGGCTTTCGCCCGTGGTGACCTTCCGAGCTCGCCTTACAGCGTCTTTGCAG
CACTGCCTTAGCTTCGTAGGGCCTCTCCTGACAGTCGAGAGCCCTTTAGACAGAAAGACG
CCTGTGCCCTGGCAAGAACTCCTGGCTACAGAAACACACTGTGCATCTAGTGCGTGTGTT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               443-555, - strand, RNAz p=0.580929

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               443-555, - strand, RNAz p=0.580929

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               123-555, gnl|bosTau2|chr15 (32070570-32070999)
               

               
               123-555, gnl|Hg17|chr11 (4577343-4576615)
               

               
               123-555, gnl|Mm7|chr7 (98727448-98727052)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               123-555, gnl|bosTau2|chr15 (32070570-32070999)
               

               
               123-555, gnl|Hg17|chr11 (4577343-4576615)
               

               
               123-555, gnl|Mm7|chr7 (98727448-98727052)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ese (0.126502)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ese (0.126502)

	123-555, gnl\|bosTau2\|chr15 (32070570-32070999)
	123-555, gnl\|Hg17\|chr11 (4577343-4576615)
	123-555, gnl\|Mm7\|chr7 (98727448-98727052)