Ss1.1-rese36c_p10.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCAAAGGCATGATCGTCACCAACCCTGGAACGAAACCAAGTTCTGTCCGCATCGACCAAC TGGATCGTGAACAGTTCAACCCCGATGTGATTACTTTTCCGATTATCGTCCACTTTGGGA TACGCCCAGCACAGTTGAGTTATGCTGGAGACCCACAGTACCAAAAACTGTGGAAGAGTT ATGTGAAACTTCGCCACCTCCTAGCAAATAGTCCCAAAGTCAAACAAACCGACAAACAGA AGCTGGCACAGAGGGAGGAAGCGCTCCAAAAAATACGACAGAAGAATACCATGAGGCGAG AAGTAACAGTGGAGCTGAGTAGCCAAGGATTCTGGAAAACTGGCATCCGTTCTGATGTCT GTCAGCATGCGATGATGCTGCCTGTTTTGACCCATCATATTCGCTACCACCAGTGCCTAA TGCATCTGGACAAGTTGATAGGATATACTTTCCAAGATCGTTGTCTGTTACAGCTGGCCA TGACTCACCCAAGTCATCACTTAAATTTGGGGATGAATCCTGATCATGCCAGGAATTCAT TGTCCAACTGTGGAATTCGACAACCCAAATATGGAGACAGAAAAGTTCATCACATGCACA TGCGGAAAAAAGGAATTAACACCTTAATAAATATTATGTCACGCCTTGGCCAAGATGATC CAACTCCTTCAAGAATTAATCACA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCAAAGGCATGATCGTCACCAACCCTGGAACGAAACCAAGTTCTGTCCGCATCGACCAAC TGGATCGTGAACAGTTCAACCCCGATGTGATTACTTTTCCGATTATCGTCCACTTTGGGA TACGCCCAGCACAGTTGAGTTATGCTGGAGACCCACAGTACCAAAAACTGTGGAAGAGTT ATGTGAAACTTCGCCACCTCCTAGCAAATAGTCCCAAAGTCAAACAAACCGACAAACAGA AGCTGGCACAGAGGGAGGAAGCGCTCCAAAAAATACGACAGAAGAATACCATGAGGCGAG AAGTAACAGTGGAGCTGAGTAGCCAAGGATTCTGGAAAACTGGCATCCGTTCTGATGTCT GTCAGCATGCGATGATGCTGCCTGTTTTGACCCATCATATTCGCTACCACCAGTGCCTAA TGCATCTGGACAAGTTGATAGGATATACTTTCCAAGATCGTTGTCTGTTACAGCTGGCCA TGACTCACCCAAGTCATCACTTAAATTTGGGGATGAATCCTGATCATGCCAGGAATTCAT TGTCCAACTGTGGAATTCGACAACCCAAATATGGAGACAGAAAAGTTCATCACATGCACA TGCGGAAAAAAGGAATTAACACCTTAATAAATATTATGTCACGCCTTGGCCAAGATGATC CAACTCCTTCAAGAATTAATCACA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 472-590, - strand, RNAz p=0.607637 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 472-590, - strand, RNAz p=0.607637 |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 32-160, gnl|bosTau2|chr20 (27430747-27430875) | |
| 32-160, gnl|Hg17|chr5 (31503928-31503800) | |
| 32-160, gnl|Mm7|chr15 (12941584-12941712) | |
| 256-384, gnl|bosTau2|chr20 (27434324-27434448) | |
| 256-384, gnl|Hg17|chr5 (31500209-31500085) | |
| 256-384, gnl|Mm7|chr15 (12944948-12945072) | |
| 472-613, gnl|bosTau2|chr20 (27441062-27441203) | |
| 472-613, gnl|canFam2|chr4 (79045552-79045402) | |
| 472-613, gnl|danRer3|chr12 (16930654-16930804) | |
| 472-613, gnl|dasNov1|scaffold_3256 (57088-57238) | |
| 472-613, gnl|echTel1|scaffold_185471 (7133-6983) | |
| 472-613, gnl|fr1|chrUn (152872395-152872541) | |
| 472-613, gnl|galGal2|chr2 (68963038-68962892) | |
| 472-613, gnl|hg17|chr5 (31485139-31485289) | |
| 472-613, gnl|Hg17|chr5 (31485285-31485144) | |
| 472-613, gnl|loxAfr1|scaffold_62939 (4038-4188) | |
| 472-613, gnl|mm7|chr15 (12950142-12949992) | |
| 472-613, gnl|Mm7|chr15 (12949994-12950135) | |
| 472-613, gnl|monDom2|scaffold_4 (62507587-62507737) | |
| 472-613, gnl|oryCun1|scaffold_198362 (67374-67224) | |
| 472-613, gnl|panTro1|chr4 (85916311-85916161) | |
| 472-613, gnl|rheMac2|chr6 (31517244-31517394) | |
| 472-613, gnl|rn3|chr2 (62332650-62332500) | |
| 472-613, gnl|tetNig1|chrUn_random (132678487-132678634) | |
| 472-613, gnl|xenTro1|scaffold_954 (368500-368650) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 32-160, gnl|bosTau2|chr20 (27430747-27430875) | |
| 32-160, gnl|Hg17|chr5 (31503928-31503800) | |
| 32-160, gnl|Mm7|chr15 (12941584-12941712) | |
| 256-384, gnl|bosTau2|chr20 (27434324-27434448) | |
| 256-384, gnl|Hg17|chr5 (31500209-31500085) | |
| 256-384, gnl|Mm7|chr15 (12944948-12945072) | |
| 472-613, gnl|bosTau2|chr20 (27441062-27441203) | |
| 472-613, gnl|canFam2|chr4 (79045552-79045402) | |
| 472-613, gnl|danRer3|chr12 (16930654-16930804) | |
| 472-613, gnl|dasNov1|scaffold_3256 (57088-57238) | |
| 472-613, gnl|echTel1|scaffold_185471 (7133-6983) | |
| 472-613, gnl|fr1|chrUn (152872395-152872541) | |
| 472-613, gnl|galGal2|chr2 (68963038-68962892) | |
| 472-613, gnl|hg17|chr5 (31485139-31485289) | |
| 472-613, gnl|Hg17|chr5 (31485285-31485144) | |
| 472-613, gnl|loxAfr1|scaffold_62939 (4038-4188) | |
| 472-613, gnl|mm7|chr15 (12950142-12949992) | |
| 472-613, gnl|Mm7|chr15 (12949994-12950135) | |
| 472-613, gnl|monDom2|scaffold_4 (62507587-62507737) | |
| 472-613, gnl|oryCun1|scaffold_198362 (67374-67224) | |
| 472-613, gnl|panTro1|chr4 (85916311-85916161) | |
| 472-613, gnl|rheMac2|chr6 (31517244-31517394) | |
| 472-613, gnl|rn3|chr2 (62332650-62332500) | |
| 472-613, gnl|tetNig1|chrUn_random (132678487-132678634) | |
| 472-613, gnl|xenTro1|scaffold_954 (368500-368650) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ese (0.126502) |