Non-Coding RNA Search

Ss1.1-rese37c_n9.5

Sequence:


               
               GCAAATGCCAGGCTGGGGTTGGCAGACACTCACAAGGACCTGAAATGACATGATGGGGGG
GTCAGGGAAATATGACTCTAATCAGGCATTTTACACCTGTCACAATCTTGAATGTCTAAA
TACCTTCAGGTGAGGCACCGTGGTGATCAGCTACGAACAGTTCTTCCAGCTTTCACCGAG
GAACAAGATGAAGACAAATCCGTTCCTTTGGCCAGATTCCAGCTTTAGCTTTATGGCTTT
CCCACAGAGACTGGAATGCTTCTGCCTGAGGCCACTGGCCTCTTTCCTCAGCCCTTTAAT
ACTCAAAAGTCCCAGCTCCCCGTTGAGGTATTTTAATGCTTGGCCTCTGGCCTCCCCAGC
CCTGTAGCCTCTCTTTACTGCTCTGACATCCAGATCCCAGTGGTGAGAAGTCTCTGAGAA
AGCACAGTAGTCTGGGACTCTGGGCACTTACTTCCTTGAACTAAAAATATCTCCTTCGTC
TTAAAATACTAACATTGAACTCACTGAAGTAATCTTTGCTTTTAAAATCAGACTGTGGGG
TAAGGGTTTGGGGAATTTTCTTTTGAGTTTCTCCGCCCCACTCAGAAAGCAGCTCTTGGC
TGTGTGAAATTTTCAGCTCCGAGCAGCCCAGGGGAGTGTAAACAAAGTGTGGATGAAGGT
CAGACCTTCCTGTAAGTTTCTGAGAAAACCAGAAGCCTGCTAACCACACAGACCAGTACT
TGGTTCTAATCAATCTGTCACCTGACTGAGGTCTGCCTGAGGGATGGCACAGGTTCTGGC
AGGAGAGAACCTCTTTGTCATGTAACTACAATTCTCTGTTGCTCAGCACAGAGATGGAAA
CAAACACTACTTTCTAATAAAATTTGTGTTACACTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCAAATGCCAGGCTGGGGTTGGCAGACACTCACAAGGACCTGAAATGACATGATGGGGGG
GTCAGGGAAATATGACTCTAATCAGGCATTTTACACCTGTCACAATCTTGAATGTCTAAA
TACCTTCAGGTGAGGCACCGTGGTGATCAGCTACGAACAGTTCTTCCAGCTTTCACCGAG
GAACAAGATGAAGACAAATCCGTTCCTTTGGCCAGATTCCAGCTTTAGCTTTATGGCTTT
CCCACAGAGACTGGAATGCTTCTGCCTGAGGCCACTGGCCTCTTTCCTCAGCCCTTTAAT
ACTCAAAAGTCCCAGCTCCCCGTTGAGGTATTTTAATGCTTGGCCTCTGGCCTCCCCAGC
CCTGTAGCCTCTCTTTACTGCTCTGACATCCAGATCCCAGTGGTGAGAAGTCTCTGAGAA
AGCACAGTAGTCTGGGACTCTGGGCACTTACTTCCTTGAACTAAAAATATCTCCTTCGTC
TTAAAATACTAACATTGAACTCACTGAAGTAATCTTTGCTTTTAAAATCAGACTGTGGGG
TAAGGGTTTGGGGAATTTTCTTTTGAGTTTCTCCGCCCCACTCAGAAAGCAGCTCTTGGC
TGTGTGAAATTTTCAGCTCCGAGCAGCCCAGGGGAGTGTAAACAAAGTGTGGATGAAGGT
CAGACCTTCCTGTAAGTTTCTGAGAAAACCAGAAGCCTGCTAACCACACAGACCAGTACT
TGGTTCTAATCAATCTGTCACCTGACTGAGGTCTGCCTGAGGGATGGCACAGGTTCTGGC
AGGAGAGAACCTCTTTGTCATGTAACTACAATTCTCTGTTGCTCAGCACAGAGATGGAAA
CAAACACTACTTTCTAATAAAATTTGTGTTACACTG

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               595-876, - strand, RNAz p=0.989995
               

               
               641-755, - strand, RNAz p=0.989693

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               595-876, - strand, RNAz p=0.989995
               

               
               641-755, - strand, RNAz p=0.989693

Aligned organism(s): 14 entry(ies)

More info

Aligned organism(s): 14 entry(ies)

Help | Less info


               
               60-876, gnl|bosTau2|chr19 (13374494-13375325)
               

               
               60-876, gnl|canFam2|chr9 (45922460-45923107)
               

               
               60-876, gnl|dasNov1|scaffold_32457 (3146-3784)
               

               
               60-876, gnl|echTel1|scaffold_311281 (13587-13195)
               

               
               60-876, gnl|hg17|chr17 (23697302-23697945)
               

               
               60-876, gnl|Hg17|chr17 (23697305-23698159)
               

               
               60-876, gnl|loxAfr1|scaffold_60109 (38044-37457)
               

               
               60-876, gnl|mm7|chr11 (78605257-78604672)
               

               
               60-876, gnl|Mm7|chr11 (78605260-78604484)
               

               
               60-876, gnl|monDom2|scaffold_33 (26066997-26066349)
               

               
               60-876, gnl|oryCun1|scaffold_205879 (43490-44095)
               

               
               60-876, gnl|panTro1|chr19 (27034849-27035492)
               

               
               60-876, gnl|rheMac2|chr16 (23528926-23529573)
               

               
               60-876, gnl|rn3|chr10 (64646677-64646005)

Aligned organism(s): 14 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               60-876, gnl|bosTau2|chr19 (13374494-13375325)
               

               
               60-876, gnl|canFam2|chr9 (45922460-45923107)
               

               
               60-876, gnl|dasNov1|scaffold_32457 (3146-3784)
               

               
               60-876, gnl|echTel1|scaffold_311281 (13587-13195)
               

               
               60-876, gnl|hg17|chr17 (23697302-23697945)
               

               
               60-876, gnl|Hg17|chr17 (23697305-23698159)
               

               
               60-876, gnl|loxAfr1|scaffold_60109 (38044-37457)
               

               
               60-876, gnl|mm7|chr11 (78605257-78604672)
               

               
               60-876, gnl|Mm7|chr11 (78605260-78604484)
               

               
               60-876, gnl|monDom2|scaffold_33 (26066997-26066349)
               

               
               60-876, gnl|oryCun1|scaffold_205879 (43490-44095)
               

               
               60-876, gnl|panTro1|chr19 (27034849-27035492)
               

               
               60-876, gnl|rheMac2|chr16 (23528926-23529573)
               

               
               60-876, gnl|rn3|chr10 (64646677-64646005)

Expressed library(ies): 7 entry(ies)

More info

Expressed library(ies): 7 entry(ies)

Help | Less info


               
               cmu (0.55918)
               

               
               ton (0.351)
               

               
               fhi (0.169578)
               

               
               cst (0.140036)
               

               
               ese (0.126502)
               

               
               med (0.116252)
               

               
               ldo (0.0970026)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cmu (0.55918)
               

               
               ton (0.351)
               

               
               fhi (0.169578)
               

               
               cst (0.140036)
               

               
               ese (0.126502)
               

               
               med (0.116252)
               

               
               ldo (0.0970026)

	595-876, - strand, RNAz p=0.989995
	641-755, - strand, RNAz p=0.989693

	60-876, gnl\|bosTau2\|chr19 (13374494-13375325)
	60-876, gnl\|canFam2\|chr9 (45922460-45923107)
	60-876, gnl\|dasNov1\|scaffold_32457 (3146-3784)
	60-876, gnl\|echTel1\|scaffold_311281 (13587-13195)
	60-876, gnl\|hg17\|chr17 (23697302-23697945)
	60-876, gnl\|Hg17\|chr17 (23697305-23698159)
	60-876, gnl\|loxAfr1\|scaffold_60109 (38044-37457)
	60-876, gnl\|mm7\|chr11 (78605257-78604672)
	60-876, gnl\|Mm7\|chr11 (78605260-78604484)
	60-876, gnl\|monDom2\|scaffold_33 (26066997-26066349)
	60-876, gnl\|oryCun1\|scaffold_205879 (43490-44095)
	60-876, gnl\|panTro1\|chr19 (27034849-27035492)
	60-876, gnl\|rheMac2\|chr16 (23528926-23529573)
	60-876, gnl\|rn3\|chr10 (64646677-64646005)

	cmu (0.55918)
	ton (0.351)
	fhi (0.169578)
	cst (0.140036)
	ese (0.126502)
	med (0.116252)
	ldo (0.0970026)