Non-Coding RNA Search

Ss1.1-rese37c_p20.5

Sequence:


               
               TTCACATACAGTCAGGGTGATGATCTGCTGATGCTCTTGGATGTCATTTGATCGGAATAT
ACAGAGGAATAGGTGATTCACTGAAATATCATTATAAACATTGGAACAAAATCGTGCTGC
AGGAATGAAAACGACCAGACTTCTATGCAAGAATGTCTACTACCAACTCCTTGTGGAGGA
GGTTGGGCCAACACTACAGTGGAGATAAACACCTTTGTGATGATGGTGACAGACCAGAGG
ACTACTGTTGTTTTTATAGCAGCTGCCCATTTGTGTGTTATTAGCCTGGGCTGCATGTGC
TACGTTTATTCATGGTGGGAAAGTTAATTATCATTCTGGAAATATTGAAAGATTCTGTCT
TTTCCTTCCAAACTTATGTACTTGTGTCTAGATCAATAAAGCACAGATAGAGAGGCTTGA
GTGAAATATCCCAGATTGTTAGGTCCTTTGCTATTTGATTTGCTCTTCAGTATAGTATAC
GTTGCATAACTCACATGTTGTCATAATATTTCACATGGACTATAAAATTTATTAATGTGG
ACACTAAGGGATAAAAAACTGAGGAAATGGATGAGAGTATTTTTTTTTTACTCTTCCAAA
TGTATTTTTGATACACCATTATAGAGACTTGCCATCAATAAAGCACTGGTAGATAGTCTC
ACAGATATTTTTATTTAGTGTTTCTTTGATTGTCAGCCCTCTGTGCCTCTAAACCTAGCC
TAGCAAGCAACTTGGGCAAGTGTTGTAAAGTTGAAGAACTTATAAGTGACATTTTTTAGG
GTTTTTAAAGAATGTCTGATTGTATAAGTTAGCTTAATTTATTGTATAAACTTGGGGTCC
AAGATGACATTTTAAGCCTTCTTATGAATAGGCATTAGGTGAGTTTGGTAAAATAGAAAA
TACTTTTTCCACGGGGTAGCTAATAATAGGTCAGTCAAGTTGATGATGCCTGTCCATTAA
CCATTTATGTATTATTAATAAAATTACAAGAATAAAATCACAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTCACATACAGTCAGGGTGATGATCTGCTGATGCTCTTGGATGTCATTTGATCGGAATAT
ACAGAGGAATAGGTGATTCACTGAAATATCATTATAAACATTGGAACAAAATCGTGCTGC
AGGAATGAAAACGACCAGACTTCTATGCAAGAATGTCTACTACCAACTCCTTGTGGAGGA
GGTTGGGCCAACACTACAGTGGAGATAAACACCTTTGTGATGATGGTGACAGACCAGAGG
ACTACTGTTGTTTTTATAGCAGCTGCCCATTTGTGTGTTATTAGCCTGGGCTGCATGTGC
TACGTTTATTCATGGTGGGAAAGTTAATTATCATTCTGGAAATATTGAAAGATTCTGTCT
TTTCCTTCCAAACTTATGTACTTGTGTCTAGATCAATAAAGCACAGATAGAGAGGCTTGA
GTGAAATATCCCAGATTGTTAGGTCCTTTGCTATTTGATTTGCTCTTCAGTATAGTATAC
GTTGCATAACTCACATGTTGTCATAATATTTCACATGGACTATAAAATTTATTAATGTGG
ACACTAAGGGATAAAAAACTGAGGAAATGGATGAGAGTATTTTTTTTTTACTCTTCCAAA
TGTATTTTTGATACACCATTATAGAGACTTGCCATCAATAAAGCACTGGTAGATAGTCTC
ACAGATATTTTTATTTAGTGTTTCTTTGATTGTCAGCCCTCTGTGCCTCTAAACCTAGCC
TAGCAAGCAACTTGGGCAAGTGTTGTAAAGTTGAAGAACTTATAAGTGACATTTTTTAGG
GTTTTTAAAGAATGTCTGATTGTATAAGTTAGCTTAATTTATTGTATAAACTTGGGGTCC
AAGATGACATTTTAAGCCTTCTTATGAATAGGCATTAGGTGAGTTTGGTAAAATAGAAAA
TACTTTTTCCACGGGGTAGCTAATAATAGGTCAGTCAAGTTGATGATGCCTGTCCATTAA
CCATTTATGTATTATTAATAAAATTACAAGAATAAAATCACAAAAAAA

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

Help | Less info


               
               9-1000, gnl|bosTau2|chr17 (18770974-18771926)
               

               
               9-1000, gnl|Hg17|chr4 (129386640-129387663)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               9-1000, gnl|bosTau2|chr17 (18770974-18771926)
               

               
               9-1000, gnl|Hg17|chr4 (129386640-129387663)

Expressed library(ies): 10 entry(ies)

More info

Expressed library(ies): 10 entry(ies)

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               thg (0.507164)
               

               
               kid (0.389206)
               

               
               isp (0.300752)
               

               
               tes (0.207814)
               

               
               nlu (0.191681)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               csk (0.140746)
               

               
               ese (0.126502)
               

               
               tra (0.123092)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               thg (0.507164)
               

               
               kid (0.389206)
               

               
               isp (0.300752)
               

               
               tes (0.207814)
               

               
               nlu (0.191681)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               csk (0.140746)
               

               
               ese (0.126502)
               

               
               tra (0.123092)

	9-1000, gnl\|bosTau2\|chr17 (18770974-18771926)
	9-1000, gnl\|Hg17\|chr4 (129386640-129387663)

	thg (0.507164)
	kid (0.389206)
	isp (0.300752)
	tes (0.207814)
	nlu (0.191681)
	lin (0.145603)
	spl (0.143184)
	csk (0.140746)
	ese (0.126502)
	tra (0.123092)