Non-Coding RNA Search

Ss1.1-rese38c_e10.5

Sequence:


               
               ACATTCTGTGGGTTAGCCAATATTCAGAAATTCAGGGAGCTCCCGGGGAGACTTTCTTTT
CTTTGCTTATGCACACACCTGAGCATCTGAGTTGGAGAGTGTACAGAATCTCGTCTGCGT
GCGTGGGTAGGACTGTGTCTTCGTGTCCGTTTGTCTCATACATTCCATTAAAAACCAGAA
GTAAGACGCACCTTGGGAGGCACCTCCCAATGCTGCTTTTTTTTTTTTTTTCTTTTTCTA
TGAAACATACCAGCTGATTGTAATTGCTACATGTACTCGTGATTATTCTGAGCCTGTCAC
TCCCCGGTCTGGGACACATATCTGCAGGTGTTCACTTTCCAGTAAGGTGGCATGGGATGC
CTTGTTTCTGTTTTTGAAACCCCTTCCTAATTTGGCCGTCTTGGGCACATTATGGCAAGA
TGCCTCATGTCTGGCTGAAAAAGCCCTCTGAGAGGGGACGTTGCAGTGAGTATATGCTAA
TCCAAACTCTGATGTGTTCAGTGCTGAAGGAGTGACGCATGTATTTAGAGGCCACGTCCG
CAGTTAGGGCTGGGAGGTGTCAGCACGGACAGGATGCTGTCCCAGTAAAAGGAGAGCACG
TGTTTCCCCGGGGCTTTTTGCTCATCGGCCTTCGGGAGTGATTGGGCCAGATTTTCCAGA
AGATGTTTTTAGATTTGTAAAAATCATGATTTGCAGCAGGAATTCACAAAGACACGTCCA
CAAAAAGAAGGATGCTCCCATCTGCCAGTTGTCGGTGGACACCTTTCTGACTCGTGACAT
TCCCTTAGGTGCTACTACCCCCATCAGCCGAGGGAAGCTGGCCACCTGAACGTCAGAGCC
ACCAGGCCACATCCTGCTCTAAGGGAACCAGTGCTTGATCCTCTACCCTCCATAAAATGT
GCATGTGCAGACTCGACACTCAGAACAGCTGTATGGAACCCATCCAGGCTTTACAGCTGT
CTGGCCAATGACCCTGTCTCCAAGCTCGTCACAGCATCCATTCCGCCGTCTGTCCTTGCG
TCCTTGCGTACGTGCTGGGGGTTGGCAGCGCGCAAACACCCCACAAGCCACCGGATTCAT
CATGGGACAAATGATATATTCGCATATCCCTAAGTCAGGAAGAGGATCATCAGTGGTTTA
TCAGTCCTGTTTCTATTTAATGGTCCTGGTCCAGCCAATTTGAAAATGTTTTGGTTTGCA
ATATATGCCTTGACTTAATTAAGCTTCCCTGTTTTAAATAGCCAAATCATTGGCACAGGA
AGGGATTTAGGAGAGAGGGATGTGTGATCTAAGTGAGATTTAAAAAAAAAAAAATCGGTG
ATACTTATCATAGAAGGTGCTTTTCAAAACAACCACTGTTGCAGCTCTCAATCCTGCTCT
GCCCAAAGAAGTCGTTATAGGACAAGTGTGTGCAGCCAGAGGAAGGGGGTTTGCTGAAAA
TCAAGGAAGTGGTTGAAAATGTCCTTGTAAATTTCATTGTATAATGTGTATTTCTTGGGA
AATGACGGACTTATTCTAAGCTAAGTGGTGACATTTCACATTTTCAAAACCAAAATGTTC
GATATGTATTACTCTCTTTCCTATATTGTATGTAGAGACTATTTTTAAATCATTAAATTT
TTAGATGTCTGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACATTCTGTGGGTTAGCCAATATTCAGAAATTCAGGGAGCTCCCGGGGAGACTTTCTTTT
CTTTGCTTATGCACACACCTGAGCATCTGAGTTGGAGAGTGTACAGAATCTCGTCTGCGT
GCGTGGGTAGGACTGTGTCTTCGTGTCCGTTTGTCTCATACATTCCATTAAAAACCAGAA
GTAAGACGCACCTTGGGAGGCACCTCCCAATGCTGCTTTTTTTTTTTTTTTCTTTTTCTA
TGAAACATACCAGCTGATTGTAATTGCTACATGTACTCGTGATTATTCTGAGCCTGTCAC
TCCCCGGTCTGGGACACATATCTGCAGGTGTTCACTTTCCAGTAAGGTGGCATGGGATGC
CTTGTTTCTGTTTTTGAAACCCCTTCCTAATTTGGCCGTCTTGGGCACATTATGGCAAGA
TGCCTCATGTCTGGCTGAAAAAGCCCTCTGAGAGGGGACGTTGCAGTGAGTATATGCTAA
TCCAAACTCTGATGTGTTCAGTGCTGAAGGAGTGACGCATGTATTTAGAGGCCACGTCCG
CAGTTAGGGCTGGGAGGTGTCAGCACGGACAGGATGCTGTCCCAGTAAAAGGAGAGCACG
TGTTTCCCCGGGGCTTTTTGCTCATCGGCCTTCGGGAGTGATTGGGCCAGATTTTCCAGA
AGATGTTTTTAGATTTGTAAAAATCATGATTTGCAGCAGGAATTCACAAAGACACGTCCA
CAAAAAGAAGGATGCTCCCATCTGCCAGTTGTCGGTGGACACCTTTCTGACTCGTGACAT
TCCCTTAGGTGCTACTACCCCCATCAGCCGAGGGAAGCTGGCCACCTGAACGTCAGAGCC
ACCAGGCCACATCCTGCTCTAAGGGAACCAGTGCTTGATCCTCTACCCTCCATAAAATGT
GCATGTGCAGACTCGACACTCAGAACAGCTGTATGGAACCCATCCAGGCTTTACAGCTGT
CTGGCCAATGACCCTGTCTCCAAGCTCGTCACAGCATCCATTCCGCCGTCTGTCCTTGCG
TCCTTGCGTACGTGCTGGGGGTTGGCAGCGCGCAAACACCCCACAAGCCACCGGATTCAT
CATGGGACAAATGATATATTCGCATATCCCTAAGTCAGGAAGAGGATCATCAGTGGTTTA
TCAGTCCTGTTTCTATTTAATGGTCCTGGTCCAGCCAATTTGAAAATGTTTTGGTTTGCA
ATATATGCCTTGACTTAATTAAGCTTCCCTGTTTTAAATAGCCAAATCATTGGCACAGGA
AGGGATTTAGGAGAGAGGGATGTGTGATCTAAGTGAGATTTAAAAAAAAAAAAATCGGTG
ATACTTATCATAGAAGGTGCTTTTCAAAACAACCACTGTTGCAGCTCTCAATCCTGCTCT
GCCCAAAGAAGTCGTTATAGGACAAGTGTGTGCAGCCAGAGGAAGGGGGTTTGCTGAAAA
TCAAGGAAGTGGTTGAAAATGTCCTTGTAAATTTCATTGTATAATGTGTATTTCTTGGGA
AATGACGGACTTATTCTAAGCTAAGTGGTGACATTTCACATTTTCAAAACCAAAATGTTC
GATATGTATTACTCTCTTTCCTATATTGTATGTAGAGACTATTTTTAAATCATTAAATTT
TTAGATGTCTGT

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               66-608, gnl|bosTau2|chr23 (34868113-34868668)
               

               
               66-608, gnl|Hg17|chr6 (11293182-11292641)
               

               
               66-608, gnl|Mm7|chr13 (40750422-40749941)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               66-608, gnl|bosTau2|chr23 (34868113-34868668)
               

               
               66-608, gnl|Hg17|chr6 (11293182-11292641)
               

               
               66-608, gnl|Mm7|chr13 (40750422-40749941)

Expressed library(ies): 22 entry(ies)

More info

Expressed library(ies): 22 entry(ies)

Help | Less info


               
               aor (0.585823)
               

               
               ill (0.526778)
               

               
               elu (0.385356)
               

               
               gul (0.355177)
               

               
               cut (0.339847)
               

               
               cty (0.31224)
               

               
               lyg (0.266205)
               

               
               tra (0.246184)
               

               
               nje (0.16592)
               

               
               mga (0.160205)
               

               
               ski (0.146735)
               

               
               csk (0.140746)
               

               
               cst (0.140036)
               

               
               nmm (0.132802)
               

               
               ute (0.132784)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               thg (0.126791)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               med (0.116252)
               

               
               jej (0.0989218)

Expressed library(ies): 22 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               aor (0.585823)
               

               
               ill (0.526778)
               

               
               elu (0.385356)
               

               
               gul (0.355177)
               

               
               cut (0.339847)
               

               
               cty (0.31224)
               

               
               lyg (0.266205)
               

               
               tra (0.246184)
               

               
               nje (0.16592)
               

               
               mga (0.160205)
               

               
               ski (0.146735)
               

               
               csk (0.140746)
               

               
               cst (0.140036)
               

               
               nmm (0.132802)
               

               
               ute (0.132784)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               thg (0.126791)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               med (0.116252)
               

               
               jej (0.0989218)

	66-608, gnl\|bosTau2\|chr23 (34868113-34868668)
	66-608, gnl\|Hg17\|chr6 (11293182-11292641)
	66-608, gnl\|Mm7\|chr13 (40750422-40749941)

	aor (0.585823)
	ill (0.526778)
	elu (0.385356)
	gul (0.355177)
	cut (0.339847)
	cty (0.31224)
	lyg (0.266205)
	tra (0.246184)
	nje (0.16592)
	mga (0.160205)
	ski (0.146735)
	csk (0.140746)
	cst (0.140036)
	nmm (0.132802)
	ute (0.132784)
	kid (0.129735)
	ova (0.129132)
	thg (0.126791)
	ese (0.126502)
	bla (0.124347)
	med (0.116252)
	jej (0.0989218)