Non-Coding RNA Search

Ss1.1-rese38c_g24.5

Sequence:


               
               CCTGTGTCCCTGGAGTGCTACACGGGGCCTCCAGAAGACAACCTGGCCCTCCTTCAGCTC
TACTTCCGGGCTCTGGTTACTGGTGCACTCCGTCCATGCTGGTGCCCCGTGCTCTATGCT
GTGGCTGTGGCTCATGTCAACAGCTTCATCTTCTCCCAAGACCCCAAGAGCTCAGATGAG
GTGAAGGCTGCCCGCAGGAGCATGCTGCAGAAGACTTGGCTGCTGACAGATGAGGGTCTT
CGGCAGCACCTTCTCCACTATAAACTTCCTAATTCTGCCCTTCCAGAGGGCTTTGAGCTG
TATCCTCAGTTACCTCCTCTGCGTCAACAGTACCTCCAGAAACTGATCTCAGGGATGCTC
CAAAATGGGGTATCTGAGACCTAGTATAGCTGTTGCAGAAGAAATGGACACATTCTCCTG
GAGTTCAGCAGATGCCCACCAGAGAGAAGGGCTTTGTGTTCTGAGAGTGGGCAGGAAACA
AAGGAGCAGAACGCTTGCCTTCCTTCAAGCAAGCTCTCTGTGCGTTCTGGGAGCAGGGTG
AGCCTAGCCTTATATCCTGATATCTGGATTTCAGGAGCTGGGGCTTCTGAGGTCTGTGCT
GCGAGTGAAGGGTGACTCAGCTACGTACCCCTCTTGGGGACAAGGCAAACTCACTACACC
TCGCTTTCTCTCCCCACTCCAGGCCAGGGTGTGTGAATACTAGAGCTGTGTTACTAGAGC
TGTGTATGGAAATAAAGAATTTTTTTTTTTTTTTAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTGTGTCCCTGGAGTGCTACACGGGGCCTCCAGAAGACAACCTGGCCCTCCTTCAGCTC
TACTTCCGGGCTCTGGTTACTGGTGCACTCCGTCCATGCTGGTGCCCCGTGCTCTATGCT
GTGGCTGTGGCTCATGTCAACAGCTTCATCTTCTCCCAAGACCCCAAGAGCTCAGATGAG
GTGAAGGCTGCCCGCAGGAGCATGCTGCAGAAGACTTGGCTGCTGACAGATGAGGGTCTT
CGGCAGCACCTTCTCCACTATAAACTTCCTAATTCTGCCCTTCCAGAGGGCTTTGAGCTG
TATCCTCAGTTACCTCCTCTGCGTCAACAGTACCTCCAGAAACTGATCTCAGGGATGCTC
CAAAATGGGGTATCTGAGACCTAGTATAGCTGTTGCAGAAGAAATGGACACATTCTCCTG
GAGTTCAGCAGATGCCCACCAGAGAGAAGGGCTTTGTGTTCTGAGAGTGGGCAGGAAACA
AAGGAGCAGAACGCTTGCCTTCCTTCAAGCAAGCTCTCTGTGCGTTCTGGGAGCAGGGTG
AGCCTAGCCTTATATCCTGATATCTGGATTTCAGGAGCTGGGGCTTCTGAGGTCTGTGCT
GCGAGTGAAGGGTGACTCAGCTACGTACCCCTCTTGGGGACAAGGCAAACTCACTACACC
TCGCTTTCTCTCCCCACTCCAGGCCAGGGTGTGTGAATACTAGAGCTGTGTTACTAGAGC
TGTGTATGGAAATAAAGAATTTTTTTTTTTTTTTAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|26332379|dbj|BAC25083.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|26332379|dbj|BAC25083.1|

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               313-425, + strand, RNAz p=0.796829

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               313-425, + strand, RNAz p=0.796829

Homologous human UTR: 1 entry(ies)

More info

Homologous human UTR: 1 entry(ies)

Help | Less info


               
               5' of NM_015540, +

Homologous human UTR: 1 entry(ies)

Help | Less info

Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_015540, +

Aligned organism(s): 22 entry(ies)

More info

Aligned organism(s): 22 entry(ies)

Help | Less info


               
               1-175, gnl|bosTau2|chr10 (23026213-23026039)
               

               
               1-175, gnl|canFam2|chr30 (11546860-11547066)
               

               
               1-175, gnl|danRer3|chr14 (42249971-42250171)
               

               
               1-175, gnl|dasNov1|scaffold_63362 (3744-3950)
               

               
               1-175, gnl|echTel1|scaffold_299254 (2740-2944)
               

               
               1-175, gnl|fr1|chrUn (134292107-134292295)
               

               
               1-175, gnl|galGal2|chr5 (22120684-22120875)
               

               
               1-175, gnl|hg17|chr15 (39597487-39597691)
               

               
               1-175, gnl|Hg17|chr15 (39597669-39597495)
               

               
               1-175, gnl|loxAfr1|scaffold_7974 (79501-79297)
               

               
               1-175, gnl|mm7|chr2 (119505579-119505784)
               

               
               1-175, gnl|Mm7|chr2 (119505761-119505587)
               

               
               1-175, gnl|monDom2|scaffold_12 (603210-603021)
               

               
               1-175, gnl|oryCun1|scaffold_199507 (3171-3375)
               

               
               1-175, gnl|panTro1|chr16 (39568418-39568622)
               

               
               1-175, gnl|rheMac2|chr7 (19907412-19907616)
               

               
               1-175, gnl|rn3|chr3 (106175412-106175616)
               

               
               1-175, gnl|tetNig1|chr10 (5842350-5842498)
               

               
               1-175, gnl|xenTro1|scaffold_33 (3027327-3027139)
               


               
               233-708, gnl|bosTau2|chr10 (23025735-23025245)
               

               
               233-708, gnl|Hg17|chr15 (39597183-39596700)
               

               
               233-708, gnl|Mm7|chr2 (119505295-119504842)

Aligned organism(s): 22 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-175, gnl|bosTau2|chr10 (23026213-23026039)
               

               
               1-175, gnl|canFam2|chr30 (11546860-11547066)
               

               
               1-175, gnl|danRer3|chr14 (42249971-42250171)
               

               
               1-175, gnl|dasNov1|scaffold_63362 (3744-3950)
               

               
               1-175, gnl|echTel1|scaffold_299254 (2740-2944)
               

               
               1-175, gnl|fr1|chrUn (134292107-134292295)
               

               
               1-175, gnl|galGal2|chr5 (22120684-22120875)
               

               
               1-175, gnl|hg17|chr15 (39597487-39597691)
               

               
               1-175, gnl|Hg17|chr15 (39597669-39597495)
               

               
               1-175, gnl|loxAfr1|scaffold_7974 (79501-79297)
               

               
               1-175, gnl|mm7|chr2 (119505579-119505784)
               

               
               1-175, gnl|Mm7|chr2 (119505761-119505587)
               

               
               1-175, gnl|monDom2|scaffold_12 (603210-603021)
               

               
               1-175, gnl|oryCun1|scaffold_199507 (3171-3375)
               

               
               1-175, gnl|panTro1|chr16 (39568418-39568622)
               

               
               1-175, gnl|rheMac2|chr7 (19907412-19907616)
               

               
               1-175, gnl|rn3|chr3 (106175412-106175616)
               

               
               1-175, gnl|tetNig1|chr10 (5842350-5842498)
               

               
               1-175, gnl|xenTro1|scaffold_33 (3027327-3027139)
               


               
               233-708, gnl|bosTau2|chr10 (23025735-23025245)
               

               
               233-708, gnl|Hg17|chr15 (39597183-39596700)
               

               
               233-708, gnl|Mm7|chr2 (119505295-119504842)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

Help | Less info


               
               fcc (0.197785)
               

               
               ese (0.126502)
               

               
               jej (0.0989218)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.197785)
               

               
               ese (0.126502)
               

               
               jej (0.0989218)

	1-175, gnl\|bosTau2\|chr10 (23026213-23026039)
	1-175, gnl\|canFam2\|chr30 (11546860-11547066)
	1-175, gnl\|danRer3\|chr14 (42249971-42250171)
	1-175, gnl\|dasNov1\|scaffold_63362 (3744-3950)
	1-175, gnl\|echTel1\|scaffold_299254 (2740-2944)
	1-175, gnl\|fr1\|chrUn (134292107-134292295)
	1-175, gnl\|galGal2\|chr5 (22120684-22120875)
	1-175, gnl\|hg17\|chr15 (39597487-39597691)
	1-175, gnl\|Hg17\|chr15 (39597669-39597495)
	1-175, gnl\|loxAfr1\|scaffold_7974 (79501-79297)
	1-175, gnl\|mm7\|chr2 (119505579-119505784)
	1-175, gnl\|Mm7\|chr2 (119505761-119505587)
	1-175, gnl\|monDom2\|scaffold_12 (603210-603021)
	1-175, gnl\|oryCun1\|scaffold_199507 (3171-3375)
	1-175, gnl\|panTro1\|chr16 (39568418-39568622)
	1-175, gnl\|rheMac2\|chr7 (19907412-19907616)
	1-175, gnl\|rn3\|chr3 (106175412-106175616)
	1-175, gnl\|tetNig1\|chr10 (5842350-5842498)
	1-175, gnl\|xenTro1\|scaffold_33 (3027327-3027139)

	233-708, gnl\|bosTau2\|chr10 (23025735-23025245)
	233-708, gnl\|Hg17\|chr15 (39597183-39596700)
	233-708, gnl\|Mm7\|chr2 (119505295-119504842)