Non-Coding RNA Search

Ss1.1-rese39c_a2.5

Sequence:


               
               GCTCACTCTGCAGAGCCAACAGGCTTGCCATCACTGCCAGGCCGGCTGCGGCAGCTCCGG
CTTCCTGTTGCCTTAGGGACAGAGACAAAGCAAATGAAGAGACCTCAAACATCTTTTCCC
TCCCTCCCTCCCTCCCTCCTTCAGCAGGGAGCTAGCAGGACGCTAGGACCAGTCTGGGGC
ATAGAATGGACTTAATGGGGACTGGAGGGGGAGGGGGGCTTCAAGGGAAAGGGGAAGACC
TAGGACCCCCAACTGTGCAGCTTTTCGTGCATCCAGTTGTCATCCCAAAGGTAACTTGCC
TGATTTGGGGTTGCTTTGCCATCTTCTGCCCTGGCTAAACACGGCTGGGCGTATCACCCC
AATACTTCCAAATGCCTCTCCTGTATTGATTCAGTTGTTATAGCAGCTGTCGGCTTCATC
CGTGGAACGCGAGGCTCAGGCATCTCTTGCTCTGTATCCTGGGGATTGTCAGAGGCAGGT
AATAAAGGTCGTTTAAACAATAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTCACTCTGCAGAGCCAACAGGCTTGCCATCACTGCCAGGCCGGCTGCGGCAGCTCCGG
CTTCCTGTTGCCTTAGGGACAGAGACAAAGCAAATGAAGAGACCTCAAACATCTTTTCCC
TCCCTCCCTCCCTCCCTCCTTCAGCAGGGAGCTAGCAGGACGCTAGGACCAGTCTGGGGC
ATAGAATGGACTTAATGGGGACTGGAGGGGGAGGGGGGCTTCAAGGGAAAGGGGAAGACC
TAGGACCCCCAACTGTGCAGCTTTTCGTGCATCCAGTTGTCATCCCAAAGGTAACTTGCC
TGATTTGGGGTTGCTTTGCCATCTTCTGCCCTGGCTAAACACGGCTGGGCGTATCACCCC
AATACTTCCAAATGCCTCTCCTGTATTGATTCAGTTGTTATAGCAGCTGTCGGCTTCATC
CGTGGAACGCGAGGCTCAGGCATCTCTTGCTCTGTATCCTGGGGATTGTCAGAGGCAGGT
AATAAAGGTCGTTTAAACAATAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               43-161, + strand, RNAz p=0.588034

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               43-161, + strand, RNAz p=0.588034

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_012282, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_012282, +

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               5-497, gnl|bosTau2|chrX (17211777-17212253)
               

               
               5-497, gnl|canFam2|chrX (85913151-85913970)
               

               
               5-497, gnl|dasNov1|scaffold_57268 (1643-2477)
               

               
               5-497, gnl|echTel1|scaffold_278544 (3811-4639)
               

               
               5-497, gnl|hg17|chrX (108672872-108673699)
               

               
               5-497, gnl|Hg17|chrX (108673554-108673080)
               

               
               5-497, gnl|loxAfr1|scaffold_124061 (5685-4854)
               

               
               5-497, gnl|mm7|chrX (136968772-136969663)
               

               
               5-497, gnl|Mm7|chrX (136969517-136969073)
               

               
               5-497, gnl|oryCun1|scaffold_178246 (44352-43520)
               

               
               5-497, gnl|panTro1|chrX (112367743-112368570)
               

               
               5-497, gnl|rheMac2|chrX (108341919-108342748)
               

               
               5-497, gnl|rn3|chrX (36299041-36298175)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-497, gnl|bosTau2|chrX (17211777-17212253)
               

               
               5-497, gnl|canFam2|chrX (85913151-85913970)
               

               
               5-497, gnl|dasNov1|scaffold_57268 (1643-2477)
               

               
               5-497, gnl|echTel1|scaffold_278544 (3811-4639)
               

               
               5-497, gnl|hg17|chrX (108672872-108673699)
               

               
               5-497, gnl|Hg17|chrX (108673554-108673080)
               

               
               5-497, gnl|loxAfr1|scaffold_124061 (5685-4854)
               

               
               5-497, gnl|mm7|chrX (136968772-136969663)
               

               
               5-497, gnl|Mm7|chrX (136969517-136969073)
               

               
               5-497, gnl|oryCun1|scaffold_178246 (44352-43520)
               

               
               5-497, gnl|panTro1|chrX (112367743-112368570)
               

               
               5-497, gnl|rheMac2|chrX (108341919-108342748)
               

               
               5-497, gnl|rn3|chrX (36299041-36298175)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               nms (0.427716)
               

               
               fce (0.271592)
               

               
               eye (0.170503)
               

               
               ese (0.126502)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nms (0.427716)
               

               
               fce (0.271592)
               

               
               eye (0.170503)
               

               
               ese (0.126502)

	5-497, gnl\|bosTau2\|chrX (17211777-17212253)
	5-497, gnl\|canFam2\|chrX (85913151-85913970)
	5-497, gnl\|dasNov1\|scaffold_57268 (1643-2477)
	5-497, gnl\|echTel1\|scaffold_278544 (3811-4639)
	5-497, gnl\|hg17\|chrX (108672872-108673699)
	5-497, gnl\|Hg17\|chrX (108673554-108673080)
	5-497, gnl\|loxAfr1\|scaffold_124061 (5685-4854)
	5-497, gnl\|mm7\|chrX (136968772-136969663)
	5-497, gnl\|Mm7\|chrX (136969517-136969073)
	5-497, gnl\|oryCun1\|scaffold_178246 (44352-43520)
	5-497, gnl\|panTro1\|chrX (112367743-112368570)
	5-497, gnl\|rheMac2\|chrX (108341919-108342748)
	5-497, gnl\|rn3\|chrX (36299041-36298175)