Non-Coding RNA Search

Ss1.1-rese39c_a7.5

Sequence:


               
               TTAGTAAATAAGCACAGACAGACACAGAGGCTCTGTCTCCATCTTGTTGGCATCTGCTGC
TCCTGCGACGTTGTGGAGATGGGGAGCGTCTTGGGGCTCTGCTCCATGGCGAGCTGGATA
CCGTGTTTGTGTGGCAGTGCCCCGTGTTTGCTGTGCCGATGCTGTCCAAGTGGAAACAAC
TCCACTGTAACTAGGTTGATCTATGCCCTTTTTTTGCTTGTTGGAGTGTGTGTAGCTTGT
GTAATGTTGATACCAGGAATGGAAGAACAACTGAATAAGATTCCTGGATTTTGTGAGAAT
GAGAAAGGAGTGGTCCCTTGTAATATTCTGGTTGGCTATAAAGCTGTATACCGTTTGTGC
TTTGGATTGGCAATGTTTCATCTTCTCCTGTCTCTACTGATGATCAAAGTAAAGAGCAGC
AGTGATCCTAGAGCTGCAGTGCATAATGGATTCTGGTTCTTTAAATTTGCTGTAGCAATT
GCAATTATTATTGGGGCTTTCTTCATTCCAGAAGGAACTTTTACAACTGTGTGGTTTTAT
GTAGGCATGGCAGGTGCCTTTTGCTTCATCCTTATACAGCTAGTCTTACTTATTGATTTT
GCCCATTCATGGAATGAATCATGGGTTGAAAAAATGGAAGAAGGGAAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTAGTAAATAAGCACAGACAGACACAGAGGCTCTGTCTCCATCTTGTTGGCATCTGCTGC
TCCTGCGACGTTGTGGAGATGGGGAGCGTCTTGGGGCTCTGCTCCATGGCGAGCTGGATA
CCGTGTTTGTGTGGCAGTGCCCCGTGTTTGCTGTGCCGATGCTGTCCAAGTGGAAACAAC
TCCACTGTAACTAGGTTGATCTATGCCCTTTTTTTGCTTGTTGGAGTGTGTGTAGCTTGT
GTAATGTTGATACCAGGAATGGAAGAACAACTGAATAAGATTCCTGGATTTTGTGAGAAT
GAGAAAGGAGTGGTCCCTTGTAATATTCTGGTTGGCTATAAAGCTGTATACCGTTTGTGC
TTTGGATTGGCAATGTTTCATCTTCTCCTGTCTCTACTGATGATCAAAGTAAAGAGCAGC
AGTGATCCTAGAGCTGCAGTGCATAATGGATTCTGGTTCTTTAAATTTGCTGTAGCAATT
GCAATTATTATTGGGGCTTTCTTCATTCCAGAAGGAACTTTTACAACTGTGTGGTTTTAT
GTAGGCATGGCAGGTGCCTTTTGCTTCATCCTTATACAGCTAGTCTTACTTATTGATTTT
GCCCATTCATGGAATGAATCATGGGTTGAAAAAATGGAAGAAGGGAAC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55627338|ref|XP_518719.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55627338|ref|XP_518719.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-648, gnl|bosTau2|chr9 (11071393-11072040)
               

               
               3-648, gnl|Hg17|chr6 (122821529-122816633)
               

               
               3-648, gnl|Mm7|chr10 (57345686-57341836)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-648, gnl|bosTau2|chr9 (11071393-11072040)
               

               
               3-648, gnl|Hg17|chr6 (122821529-122816633)
               

               
               3-648, gnl|Mm7|chr10 (57345686-57341836)

Expressed library(ies): 11 entry(ies)

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Expressed library(ies): 11 entry(ies)

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               ebs (0.354904)
               

               
               mcp (0.341297)
               

               
               sme (0.305437)
               

               
               cut (0.169924)
               

               
               fhi (0.169578)
               

               
               spl (0.143184)
               

               
               hlv (0.139256)
               

               
               ese (0.126502)
               

               
               eep (0.122564)
               

               
               pgl (0.118483)
               

               
               med (0.116252)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ebs (0.354904)
               

               
               mcp (0.341297)
               

               
               sme (0.305437)
               

               
               cut (0.169924)
               

               
               fhi (0.169578)
               

               
               spl (0.143184)
               

               
               hlv (0.139256)
               

               
               ese (0.126502)
               

               
               eep (0.122564)
               

               
               pgl (0.118483)
               

               
               med (0.116252)

	3-648, gnl\|bosTau2\|chr9 (11071393-11072040)
	3-648, gnl\|Hg17\|chr6 (122821529-122816633)
	3-648, gnl\|Mm7\|chr10 (57345686-57341836)

	ebs (0.354904)
	mcp (0.341297)
	sme (0.305437)
	cut (0.169924)
	fhi (0.169578)
	spl (0.143184)
	hlv (0.139256)
	ese (0.126502)
	eep (0.122564)
	pgl (0.118483)
	med (0.116252)