Non-Coding RNA Search

Ss1.1-rese39c_e3.5

Sequence:


               
               ACCGAGCCCAAAAGCCAGTGCATCGAGGGCATCAGCCGCCTGATCTGCACGGCCAAGCAC
CAGCAGAACATGCTGCGGGTCCTCATCGACGGGGTGGAGTGGAACGATGTCAAGTTCTTC
CAGCTGGCGGCCCAGTGGTCCTCCTCAGTTTACGCGGAGACAGACCCTCGCACACGCAGA
GACAGTCTTAAGTATGAACACGCCGGCGACCTGGAAACGAACGGGGCGGCTGCCCCCGGG
CCCGTGACAGCTCCGCTTATTAACCAGAGTGTCCGGCAGGGCTGGGGGGTCAGGGGCACA
GTGTCGGGGGGGGCTTGAGAATCATGGAAGGCGTGATTCGGCCTCAGGACCCCGCGCCAG
CCCCCCCAAGACGGGTTCTCGCCTTCGCCTCCTGTCCTGAGAGCTCCCTGCTTCCTCGGG
GAGCCGGGGTCAGGCGCACAGCCGCGCGGGCCCCCAGGCACCGAGCCGGGGGCCCCGAGG
CCCGAGGCCAGCCTTCTGCTGGGGGCGTCCTGAGCAGAACACAGAGGCCAGTCAGCCCAG
CCCTGGGCCCCAGCTCCGCCCTCTCGTGGTTCCCAATAAACTCCAGCCTCGTGGGGCAGT
GGAGGCTTTATAGGAGCGGATATTTCTAATGCTTTTAAATACATGTTATAATGTAGCTGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACCGAGCCCAAAAGCCAGTGCATCGAGGGCATCAGCCGCCTGATCTGCACGGCCAAGCAC
CAGCAGAACATGCTGCGGGTCCTCATCGACGGGGTGGAGTGGAACGATGTCAAGTTCTTC
CAGCTGGCGGCCCAGTGGTCCTCCTCAGTTTACGCGGAGACAGACCCTCGCACACGCAGA
GACAGTCTTAAGTATGAACACGCCGGCGACCTGGAAACGAACGGGGCGGCTGCCCCCGGG
CCCGTGACAGCTCCGCTTATTAACCAGAGTGTCCGGCAGGGCTGGGGGGTCAGGGGCACA
GTGTCGGGGGGGGCTTGAGAATCATGGAAGGCGTGATTCGGCCTCAGGACCCCGCGCCAG
CCCCCCCAAGACGGGTTCTCGCCTTCGCCTCCTGTCCTGAGAGCTCCCTGCTTCCTCGGG
GAGCCGGGGTCAGGCGCACAGCCGCGCGGGCCCCCAGGCACCGAGCCGGGGGCCCCGAGG
CCCGAGGCCAGCCTTCTGCTGGGGGCGTCCTGAGCAGAACACAGAGGCCAGTCAGCCCAG
CCCTGGGCCCCAGCTCCGCCCTCTCGTGGTTCCCAATAAACTCCAGCCTCGTGGGGCAGT
GGAGGCTTTATAGGAGCGGATATTTCTAATGCTTTTAAATACATGTTATAATGTAGCTGC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|11360032|pir||T46343

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|11360032|pir||T46343

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               145-398, gnl|bosTau2|chr21 (49441303-49441050)
               

               
               145-398, gnl|Hg17|chr14 (104932124-104932379)
               


               
               545-660, gnl|bosTau2|chr21 (49440246-49440129)
               

               
               545-660, gnl|Hg17|chr14 (104932524-104932633)
               

               
               545-660, gnl|Mm7|chr12 (110597021-110597129)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               145-398, gnl|bosTau2|chr21 (49441303-49441050)
               

               
               145-398, gnl|Hg17|chr14 (104932124-104932379)
               


               
               545-660, gnl|bosTau2|chr21 (49440246-49440129)
               

               
               545-660, gnl|Hg17|chr14 (104932524-104932633)
               

               
               545-660, gnl|Mm7|chr12 (110597021-110597129)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               hyp (0.285673)
               

               
               fce (0.271592)
               

               
               fhi (0.169578)
               

               
               pty (0.142714)
               

               
               cov (0.132153)
               

               
               ese (0.126502)
               

               
               eep (0.122564)
               

               
               cly (0.120642)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hyp (0.285673)
               

               
               fce (0.271592)
               

               
               fhi (0.169578)
               

               
               pty (0.142714)
               

               
               cov (0.132153)
               

               
               ese (0.126502)
               

               
               eep (0.122564)
               

               
               cly (0.120642)

	145-398, gnl\|bosTau2\|chr21 (49441303-49441050)
	145-398, gnl\|Hg17\|chr14 (104932124-104932379)

	545-660, gnl\|bosTau2\|chr21 (49440246-49440129)
	545-660, gnl\|Hg17\|chr14 (104932524-104932633)
	545-660, gnl\|Mm7\|chr12 (110597021-110597129)

	hyp (0.285673)
	fce (0.271592)
	fhi (0.169578)
	pty (0.142714)
	cov (0.132153)
	ese (0.126502)
	eep (0.122564)
	cly (0.120642)