Ss1.1-rese39c_g23.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGCATGTGTGCACCCCTACTGAGCATCCTGGGGCAACTCCTGGCCCAGCGGGCATCTGGG GCTGACCCTGCCCTGAGCCGGGCCCAGGCCCCACTTCCTCCCCCCAGGATCCTCCGGTTC CCGTGGCAGCTGGTGCGGGAACAGGTGCGGCAGACGGTGGCAGAGGCCCTACAGGTGTGG AGCGATGTGACGCCACTCACCTTCACCGAGGTGCACGAGGGCCATGCCGACATCATGATT GACTTCACCAGGTACTGGCATGGGGACAACCTGCCCTTTGATGGACCTGGGGGCATCCTG GCCCATGCCTTCTTCCCCAAGACCCACCGAGAAGGGGATGTCCACTTTGACTATGATGAG ACCTGGACAGTGGGGGACAACCAGGGCACAGACCTCCTGCAGGTGGCAGCCCACGAATTT GGCCACGTGCTCGGGCTGCAGCACACAACAGCTGCTAAGGCCCTCATGTCCCCTTTCTAC ACCTTCCGCTACCCGCTGAGCCTCAGCCCAGATGACCGCAGGGGTATCCAGCACCTCTAT GGGCAGCCTCAGCTAGCCCCCACCTCGGGATCCCCAGACCTGGGCCACAGGGCTGGGGTG GACACCAATGAGATTGCACCACTGGAGCCGGACACCCTACCAGATGCCTGCCAGGTCTCC TTTGATGCAGTTGCCACCATCCGTGGTGAACTCTTCTTCTTCAAGGCAGGCTTTGTATGG CGGCTGCGCAAGGGCCACCTGCAGCCTGGCTACCCT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGCATGTGTGCACCCCTACTGAGCATCCTGGGGCAACTCCTGGCCCAGCGGGCATCTGGG GCTGACCCTGCCCTGAGCCGGGCCCAGGCCCCACTTCCTCCCCCCAGGATCCTCCGGTTC CCGTGGCAGCTGGTGCGGGAACAGGTGCGGCAGACGGTGGCAGAGGCCCTACAGGTGTGG AGCGATGTGACGCCACTCACCTTCACCGAGGTGCACGAGGGCCATGCCGACATCATGATT GACTTCACCAGGTACTGGCATGGGGACAACCTGCCCTTTGATGGACCTGGGGGCATCCTG GCCCATGCCTTCTTCCCCAAGACCCACCGAGAAGGGGATGTCCACTTTGACTATGATGAG ACCTGGACAGTGGGGGACAACCAGGGCACAGACCTCCTGCAGGTGGCAGCCCACGAATTT GGCCACGTGCTCGGGCTGCAGCACACAACAGCTGCTAAGGCCCTCATGTCCCCTTTCTAC ACCTTCCGCTACCCGCTGAGCCTCAGCCCAGATGACCGCAGGGGTATCCAGCACCTCTAT GGGCAGCCTCAGCTAGCCCCCACCTCGGGATCCCCAGACCTGGGCCACAGGGCTGGGGTG GACACCAATGAGATTGCACCACTGGAGCCGGACACCCTACCAGATGCCTGCCAGGTCTCC TTTGATGCAGTTGCCACCATCCGTGGTGAACTCTTCTTCTTCAAGGCAGGCTTTGTATGG CGGCTGCGCAAGGGCCACCTGCAGCCTGGCTACCCT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 208-326, - strand, RNAz p=0.976831 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 208-326, - strand, RNAz p=0.976831 |
| Aligned organism(s): 38 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
| 208-371, gnl|bosTau2|chr10 (14163097-14162934) | |
| 208-371, gnl|canFam2|chr8 (6191761-6192077) | |
| 208-371, gnl|danRer3|chr2 (34208580-34208264) | |
| 208-371, gnl|dasNov1|scaffold_54810 (9627-9311) | |
| 208-371, gnl|echTel1|scaffold_318395 (114707-114395) | |
| 208-371, gnl|fr1|chrUn (68366385-68366701) | |
| 208-371, gnl|galGal2|chr11 (436795-436479) | |
| 208-371, gnl|hg17|chr14 (22381456-22381772) | |
| 208-371, gnl|Hg17|chr14 (22381583-22381746) | |
| 208-371, gnl|loxAfr1|scaffold_41187 (3555-3871) | |
| 208-371, gnl|mm7|chr14 (49303635-49303951) | |
| 208-371, gnl|Mm7|chr14 (49303762-49303925) | |
| 208-371, gnl|monDom2|scaffold_12 (27029588-27029272) | |
| 208-371, gnl|oryCun1|scaffold_207495 (146725-147045) | |
| 208-371, gnl|panTro1|chr15 (21345010-21345326) | |
| 208-371, gnl|rheMac2|chr7 (85655069-85655385) | |
| 208-371, gnl|rn3|chr15 (32514332-32514648) | |
| 208-371, gnl|tetNig1|chr15 (2165952-2165636) | |
| 208-371, gnl|xenTro1|scaffold_963 (230340-230656) | |
| 385-627, gnl|bosTau2|chr17 (41463721-41463963) | |
| 385-627, gnl|canFam2|chr26 (31798482-31798288) | |
| 385-627, gnl|danRer3|chr8 (23694966-23695145) | |
| 385-627, gnl|dasNov1|scaffold_13503 (15150-14956) | |
| 385-627, gnl|echTel1|scaffold_158296 (3536-3341) | |
| 385-627, gnl|fr1|chrUn (238908839-238909026) | |
| 385-627, gnl|galGal2|chr15 (7940968-7941158) | |
| 385-627, gnl|hg17|chr22 (22447587-22447781) | |
| 385-627, gnl|Hg17|chr22 (22447599-22447841) | |
| 385-627, gnl|loxAfr1|scaffold_115872 (4660-4852) | |
| 385-627, gnl|mm7|chr10 (75582655-75582461) | |
| 385-627, gnl|Mm7|chr10 (75582641-75582399) | |
| 385-627, gnl|monDom2|scaffold_259 (39414-39607) | |
| 385-627, gnl|oryCun1|scaffold_207495 (147521-147728) | |
| 385-627, gnl|panTro1|chr23 (22476632-22476826) | |
| 385-627, gnl|rheMac2|chr7 (85655891-85656100) | |
| 385-627, gnl|rn3|chr20 (13135011-13135209) | |
| 385-627, gnl|tetNig1|chr12 (10157809-10158008) | |
| 385-627, gnl|xenTro1|scaffold_169 (1239021-1238809) |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 208-371, gnl|bosTau2|chr10 (14163097-14162934) | |
| 208-371, gnl|canFam2|chr8 (6191761-6192077) | |
| 208-371, gnl|danRer3|chr2 (34208580-34208264) | |
| 208-371, gnl|dasNov1|scaffold_54810 (9627-9311) | |
| 208-371, gnl|echTel1|scaffold_318395 (114707-114395) | |
| 208-371, gnl|fr1|chrUn (68366385-68366701) | |
| 208-371, gnl|galGal2|chr11 (436795-436479) | |
| 208-371, gnl|hg17|chr14 (22381456-22381772) | |
| 208-371, gnl|Hg17|chr14 (22381583-22381746) | |
| 208-371, gnl|loxAfr1|scaffold_41187 (3555-3871) | |
| 208-371, gnl|mm7|chr14 (49303635-49303951) | |
| 208-371, gnl|Mm7|chr14 (49303762-49303925) | |
| 208-371, gnl|monDom2|scaffold_12 (27029588-27029272) | |
| 208-371, gnl|oryCun1|scaffold_207495 (146725-147045) | |
| 208-371, gnl|panTro1|chr15 (21345010-21345326) | |
| 208-371, gnl|rheMac2|chr7 (85655069-85655385) | |
| 208-371, gnl|rn3|chr15 (32514332-32514648) | |
| 208-371, gnl|tetNig1|chr15 (2165952-2165636) | |
| 208-371, gnl|xenTro1|scaffold_963 (230340-230656) | |
| 385-627, gnl|bosTau2|chr17 (41463721-41463963) | |
| 385-627, gnl|canFam2|chr26 (31798482-31798288) | |
| 385-627, gnl|danRer3|chr8 (23694966-23695145) | |
| 385-627, gnl|dasNov1|scaffold_13503 (15150-14956) | |
| 385-627, gnl|echTel1|scaffold_158296 (3536-3341) | |
| 385-627, gnl|fr1|chrUn (238908839-238909026) | |
| 385-627, gnl|galGal2|chr15 (7940968-7941158) | |
| 385-627, gnl|hg17|chr22 (22447587-22447781) | |
| 385-627, gnl|Hg17|chr22 (22447599-22447841) | |
| 385-627, gnl|loxAfr1|scaffold_115872 (4660-4852) | |
| 385-627, gnl|mm7|chr10 (75582655-75582461) | |
| 385-627, gnl|Mm7|chr10 (75582641-75582399) | |
| 385-627, gnl|monDom2|scaffold_259 (39414-39607) | |
| 385-627, gnl|oryCun1|scaffold_207495 (147521-147728) | |
| 385-627, gnl|panTro1|chr23 (22476632-22476826) | |
| 385-627, gnl|rheMac2|chr7 (85655891-85656100) | |
| 385-627, gnl|rn3|chr20 (13135011-13135209) | |
| 385-627, gnl|tetNig1|chr12 (10157809-10158008) | |
| 385-627, gnl|xenTro1|scaffold_169 (1239021-1238809) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nmm (0.132802) | |
| ese (0.126502) |