Non-Coding RNA Search

Ss1.1-rese39c_g9.5

Sequence:


               
               AGTTCCTTAGAGAGAGAACGCGAGCCTGCACAGGAGGCAGGAAAGGTACTCTGCCTGACA
CCACTAAGACTCGTGGAAGCCAGACTCAGAGGCAGATGCGTCCTGAGGAAGTCGGATGGA
GCATCCTCGGGCTCAGCCTTGCCACCGGATAAAGTCCCAGTCTCGGCGCTCTCCGTGGTC
TCCTCAACATCCTGCTTATTCCTTCCACGAAGACTTTCACTGAGACGGATGTGGCTCCTG
GAGAGCGTGCCCACGTGTGATCTGGCGGCAGAGAACAGAGCACACAGCTCTCCCTCACTC
GGCCCTGGACACCTCGACCCTGCGAAGAGGCCGAGACGGCGCGGGTTTTATTCTTCACCA
CTTGGCCCTCATGACATGTTGTGAGCTTTTATCAACAGATTCCCCAAGGAGTTTTCGCAC
ATGTGGCTACTTGCTACCTCCCCCCACTGCGTGCAAACCCTCCACTGTTCCTCCCATGAC
GCCCCTTCGCTGAGGCCTCCTCGCGCTATAAAACCCTATTGTTTAGTACTGTGCTGCATG
TTACGTGTCGTGCCAGCTCTCAACGGGTCCCGAGCATCGACCTGTGCTTTGGGCAGAGAC
TCTCGCAAGCTCCACAGCAAGAAAGAGCTCATCGTGAACTCGAAGGGGCAGTCTTCTGCT
GCTGCCCTTGTGAAGACGGAGCTCCTCCTGGGCTTGTCGCCCTTCTCTGGGGAAGCTGAC
ATGCTCCAGGTTTCTAGGACTCTGGGCAGTCATCTTGGAAAGGAGGAGAGGAAAGACGGT
GCTGCCACTGACCTTGATGCGGAGCTCAGCTCTGTCGTGGAGACAGTGCCAAGAGCTGGG
CTGGGCCATTTTTTGAAGGAAGGGTTGATGATGCAGAGTCCGAACTAACAGTGAGAGCCT
GGGGCTAATGCCTGATGGAAAAAGGTGGTATAGGTTCTGCTCATGCGATAAGCGGCTCGG
GAAGACTTGGAGGGTTTTATGGAATCATTAGCACAGAGCTCCCCTCTGGCCACAGAGCAG
AGGAAGGAACAGCAGACCAGTTTATAAAGCTCCAGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGTTCCTTAGAGAGAGAACGCGAGCCTGCACAGGAGGCAGGAAAGGTACTCTGCCTGACA
CCACTAAGACTCGTGGAAGCCAGACTCAGAGGCAGATGCGTCCTGAGGAAGTCGGATGGA
GCATCCTCGGGCTCAGCCTTGCCACCGGATAAAGTCCCAGTCTCGGCGCTCTCCGTGGTC
TCCTCAACATCCTGCTTATTCCTTCCACGAAGACTTTCACTGAGACGGATGTGGCTCCTG
GAGAGCGTGCCCACGTGTGATCTGGCGGCAGAGAACAGAGCACACAGCTCTCCCTCACTC
GGCCCTGGACACCTCGACCCTGCGAAGAGGCCGAGACGGCGCGGGTTTTATTCTTCACCA
CTTGGCCCTCATGACATGTTGTGAGCTTTTATCAACAGATTCCCCAAGGAGTTTTCGCAC
ATGTGGCTACTTGCTACCTCCCCCCACTGCGTGCAAACCCTCCACTGTTCCTCCCATGAC
GCCCCTTCGCTGAGGCCTCCTCGCGCTATAAAACCCTATTGTTTAGTACTGTGCTGCATG
TTACGTGTCGTGCCAGCTCTCAACGGGTCCCGAGCATCGACCTGTGCTTTGGGCAGAGAC
TCTCGCAAGCTCCACAGCAAGAAAGAGCTCATCGTGAACTCGAAGGGGCAGTCTTCTGCT
GCTGCCCTTGTGAAGACGGAGCTCCTCCTGGGCTTGTCGCCCTTCTCTGGGGAAGCTGAC
ATGCTCCAGGTTTCTAGGACTCTGGGCAGTCATCTTGGAAAGGAGGAGAGGAAAGACGGT
GCTGCCACTGACCTTGATGCGGAGCTCAGCTCTGTCGTGGAGACAGTGCCAAGAGCTGGG
CTGGGCCATTTTTTGAAGGAAGGGTTGATGATGCAGAGTCCGAACTAACAGTGAGAGCCT
GGGGCTAATGCCTGATGGAAAAAGGTGGTATAGGTTCTGCTCATGCGATAAGCGGCTCGG
GAAGACTTGGAGGGTTTTATGGAATCATTAGCACAGAGCTCCCCTCTGGCCACAGAGCAG
AGGAAGGAACAGCAGACCAGTTTATAAAGCTCCAGA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               777-893, - strand, RNAz p=0.864914

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               777-893, - strand, RNAz p=0.864914

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               178-552, gnl|bosTau2|chr19 (17647769-17648146)
               

               
               178-552, gnl|Hg17|chr17 (1947820-1948516)
               


               
               729-1056, gnl|bosTau2|chr19 (17650127-17650450)
               

               
               729-1056, gnl|Hg17|chr17 (1953229-1953548)
               

               
               729-1056, gnl|Mm7|chr11 (75203473-75203127)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               178-552, gnl|bosTau2|chr19 (17647769-17648146)
               

               
               178-552, gnl|Hg17|chr17 (1947820-1948516)
               


               
               729-1056, gnl|bosTau2|chr19 (17650127-17650450)
               

               
               729-1056, gnl|Hg17|chr17 (1953229-1953548)
               

               
               729-1056, gnl|Mm7|chr11 (75203473-75203127)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               cag (0.151194)
               

               
               ese (0.126502)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cag (0.151194)
               

               
               ese (0.126502)

	178-552, gnl\|bosTau2\|chr19 (17647769-17648146)
	178-552, gnl\|Hg17\|chr17 (1947820-1948516)

	729-1056, gnl\|bosTau2\|chr19 (17650127-17650450)
	729-1056, gnl\|Hg17\|chr17 (1953229-1953548)
	729-1056, gnl\|Mm7\|chr11 (75203473-75203127)