Non-Coding RNA Search

Ss1.1-rese39c_n18.5

Sequence:


               
               AAAAAAAAGAATTTTCCTCAAAGACGTTTAGAAAAAAAAAAAAGTACCTCCTCCCCCCAT
TTTTTTTTTTTTTTTTAAACTTGAAATCTGCCGGCCAGGCAGGGTTTTTGAGGTTAATCT
GCTTCTGTTAATCCTCGGTTGCAGCCACTACAGTTCCTCCCCAACACTAGAGAGGCACAT
TCCTTCTAGAAGGCACCTCAGATGAACAGGGGCCGGGCCCTTCAGGAAACCCACCCAAAG
CAGAAGCAGAAAACTTGCGCAACCAATGGCGCGTGGTAACAATCGTAAATAAATTAACCG
GGCACAAAAACACAGAAGGCCCGGGGGTCCCGGCGGTGTGGCCGGCTCTTCCGGAGGGAC
CAGGCCGTGGGGGGAGGGGCGCGGGAGCGAACGACACATTTTTTTGGTCATGAGAACCTG
GACTCGCCATCCGCGCCCTGCACACGCAATCCATTTAGACTTTCTCGTGAATCTTTTCCA
CTTTCACAAACAACCTATCCAGGTCATTCCTCAGGTCCTCTAGCAAGCCCTTGGCCGATT
CCAAGTTGTTCTCGTTGGTCTCGATCTTCACTGAGTACGCGACCAAACTGTCCACGGCAG
TCCTGAGCATTTTCAAGTCCGACTCCACCTGGCCCACCGAGGCTCTGAGGTTGTCGAGAG
AGGAGAGTCTGTCCAGCAGGTCCTGTGGGGGCGCGGCGGTGGCGGCGTCCCGGTCAAGCA
GCGTGCGGACCTGCTCCTGCACCTTCTGTAGCGCCTCCACTGCGCCGGGGAGCTCCGCCA
CGCGGCGCTTCAGCTCGTCCACGTCGCTGGACAGCGAGACCTGCGACTCGCCGAGGCCGC
GCACCGCGCCCGCCAGGCCGCCGTCGGCTGCGTCGGGGGCGGGGCTCAGGCCGGCCAGGC
GCTCCCGCAGCTCCGCCAGGCGCTGCGCATGCTCCGCGCTCTGCGCGCGCAGGGCCTCCA
GGCTCTCGCTTTGGCGCGCCCAGGCCTCCTGCGCTGCCTGCACCCCGTCCTCCACGCTCT
GCAGCCGCGAGTCCAAGCCCTGGCTCTCCTTCTGGAGCGTTTCAAAGGCCTCGGAGGGTC
TAAAGACCCCGTCTTCTTCCGGCCGGAGAGCTGCGGCCTTCAGCTGGCCCAGCTCCTCCT
CTAGTCTCTGGATCTCCTCCGGGAGGCGGGCGGCAGACTCCTCGGCCCGGAGGATCTTCT
CCGTGAGGGCCTGCAGGGTCAGGTGTTCCGAATCGGCCGCCTCCTTGAACCTCTGCTGCT
CCTGTTTGAGACTCACCAGCTCTTTGACCTCTGTGTAGACATCTGACTCCATGGTCTGAA
CGGTGCTTCTCAGGGCCTCAATGTCCTTCTCTTTGGACTTCACCGAGATTTGTATTTCCT
TCACCACTTCCTTCAAGGCTTTCAAGTCCTGTTTGTACCCCTCTGAGTCTTCCAGAGAGG
CGACCTTGGCCTTCACGTCATTTATTTCCTTCTGGCTCCTCTTCTGGACCTCGGTGAAGA
TGGCGATGTTGTCGTTGATGGACTTGGTGAGCTCGGTCAGCCTCTCCTCTACCGTGTTCT
CCAGGGACGTGAAGTCCCGCTCCCGGGCATCCTTTACCACGTGGATCCCGTCGGAGAGGT
CTTTGAGTATCTCATTCTGGAGTTTTTGTAGAACTTCACTGATGCGGTTGATCTCACTCT
CCCCTTGCTTCACGGCTTTCTCTGTGAGATCTTGTTTATGCTGGGGGCTTCTCACGATGG
ACTCAAAAGTCCCAAAGGTGGCTTGCAGAGACTGTACCTTCTGCTCGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAAAAAAGAATTTTCCTCAAAGACGTTTAGAAAAAAAAAAAAGTACCTCCTCCCCCCAT
TTTTTTTTTTTTTTTTAAACTTGAAATCTGCCGGCCAGGCAGGGTTTTTGAGGTTAATCT
GCTTCTGTTAATCCTCGGTTGCAGCCACTACAGTTCCTCCCCAACACTAGAGAGGCACAT
TCCTTCTAGAAGGCACCTCAGATGAACAGGGGCCGGGCCCTTCAGGAAACCCACCCAAAG
CAGAAGCAGAAAACTTGCGCAACCAATGGCGCGTGGTAACAATCGTAAATAAATTAACCG
GGCACAAAAACACAGAAGGCCCGGGGGTCCCGGCGGTGTGGCCGGCTCTTCCGGAGGGAC
CAGGCCGTGGGGGGAGGGGCGCGGGAGCGAACGACACATTTTTTTGGTCATGAGAACCTG
GACTCGCCATCCGCGCCCTGCACACGCAATCCATTTAGACTTTCTCGTGAATCTTTTCCA
CTTTCACAAACAACCTATCCAGGTCATTCCTCAGGTCCTCTAGCAAGCCCTTGGCCGATT
CCAAGTTGTTCTCGTTGGTCTCGATCTTCACTGAGTACGCGACCAAACTGTCCACGGCAG
TCCTGAGCATTTTCAAGTCCGACTCCACCTGGCCCACCGAGGCTCTGAGGTTGTCGAGAG
AGGAGAGTCTGTCCAGCAGGTCCTGTGGGGGCGCGGCGGTGGCGGCGTCCCGGTCAAGCA
GCGTGCGGACCTGCTCCTGCACCTTCTGTAGCGCCTCCACTGCGCCGGGGAGCTCCGCCA
CGCGGCGCTTCAGCTCGTCCACGTCGCTGGACAGCGAGACCTGCGACTCGCCGAGGCCGC
GCACCGCGCCCGCCAGGCCGCCGTCGGCTGCGTCGGGGGCGGGGCTCAGGCCGGCCAGGC
GCTCCCGCAGCTCCGCCAGGCGCTGCGCATGCTCCGCGCTCTGCGCGCGCAGGGCCTCCA
GGCTCTCGCTTTGGCGCGCCCAGGCCTCCTGCGCTGCCTGCACCCCGTCCTCCACGCTCT
GCAGCCGCGAGTCCAAGCCCTGGCTCTCCTTCTGGAGCGTTTCAAAGGCCTCGGAGGGTC
TAAAGACCCCGTCTTCTTCCGGCCGGAGAGCTGCGGCCTTCAGCTGGCCCAGCTCCTCCT
CTAGTCTCTGGATCTCCTCCGGGAGGCGGGCGGCAGACTCCTCGGCCCGGAGGATCTTCT
CCGTGAGGGCCTGCAGGGTCAGGTGTTCCGAATCGGCCGCCTCCTTGAACCTCTGCTGCT
CCTGTTTGAGACTCACCAGCTCTTTGACCTCTGTGTAGACATCTGACTCCATGGTCTGAA
CGGTGCTTCTCAGGGCCTCAATGTCCTTCTCTTTGGACTTCACCGAGATTTGTATTTCCT
TCACCACTTCCTTCAAGGCTTTCAAGTCCTGTTTGTACCCCTCTGAGTCTTCCAGAGAGG
CGACCTTGGCCTTCACGTCATTTATTTCCTTCTGGCTCCTCTTCTGGACCTCGGTGAAGA
TGGCGATGTTGTCGTTGATGGACTTGGTGAGCTCGGTCAGCCTCTCCTCTACCGTGTTCT
CCAGGGACGTGAAGTCCCGCTCCCGGGCATCCTTTACCACGTGGATCCCGTCGGAGAGGT
CTTTGAGTATCTCATTCTGGAGTTTTTGTAGAACTTCACTGATGCGGTTGATCTCACTCT
CCCCTTGCTTCACGGCTTTCTCTGTGAGATCTTGTTTATGCTGGGGGCTTCTCACGATGG
ACTCAAAAGTCCCAAAGGTGGCTTGCAGAGACTGTACCTTCTGCTCGA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|52789253|gb|AAH82972.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|52789253|gb|AAH82972.1|

Predicted RNA structure(s): 4 entry(ies)

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Predicted RNA structure(s): 4 entry(ies)

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               397-511, - strand, RNAz p=0.549832
               

               
               946-1065, - strand, RNAz p=0.834889
               

               
               1266-1385, - strand, RNAz p=0.894425
               

               
               1543-1662, - strand, RNAz p=0.648079

Predicted RNA structure(s): 4 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               397-511, - strand, RNAz p=0.549832
               

               
               946-1065, - strand, RNAz p=0.834889
               

               
               1266-1385, - strand, RNAz p=0.894425
               

               
               1543-1662, - strand, RNAz p=0.648079

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_006825, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_006825, -

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1779, gnl|bosTau2|chr5 (42106006-42107771)
               

               
               1-1779, gnl|Hg17|chr12 (105134851-105136596)
               

               
               1-1779, gnl|Mm7|chr10 (84068370-84070143)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1779, gnl|bosTau2|chr5 (42106006-42107771)
               

               
               1-1779, gnl|Hg17|chr12 (105134851-105136596)
               

               
               1-1779, gnl|Mm7|chr10 (84068370-84070143)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               nca (0.410621)
               

               
               ese (0.253004)
               

               
               eep (0.245128)
               

               
               nlu (0.191681)
               

               
               nep (0.183925)
               

               
               eye (0.170503)
               

               
               jca (0.11396)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nca (0.410621)
               

               
               ese (0.253004)
               

               
               eep (0.245128)
               

               
               nlu (0.191681)
               

               
               nep (0.183925)
               

               
               eye (0.170503)
               

               
               jca (0.11396)

	397-511, - strand, RNAz p=0.549832
	946-1065, - strand, RNAz p=0.834889
	1266-1385, - strand, RNAz p=0.894425
	1543-1662, - strand, RNAz p=0.648079

	1-1779, gnl\|bosTau2\|chr5 (42106006-42107771)
	1-1779, gnl\|Hg17\|chr12 (105134851-105136596)
	1-1779, gnl\|Mm7\|chr10 (84068370-84070143)

	nca (0.410621)
	ese (0.253004)
	eep (0.245128)
	nlu (0.191681)
	nep (0.183925)
	eye (0.170503)
	jca (0.11396)