Ss1.1-rese40c_b1.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCTTCCGGCCGACGGTGTTGCTTGTTTTGCACGTGTGTCGCCCCTTTGGAATTCCTGGAT TACCTTTGCTCTTGGCGAATTTGTCTGGCCGGGATTCCGTGCAGACTTAAGGATGAAGGC TAGACGAAATAAAAAACAGGTCCCAAGCTTTCGGAAATTGCTAAAAACTAGTAAAGTCAA GCTTGAAAACAAACTAAAGAACAAACAACTTAAACAACAAAGCACTCAGAAGAAATACCG AAAAGAACAGAGGAAACTAAGGCAAGCTGTAAAAGATGCTGTGTCTAAGAAACCTATTCC ATTGGAGGACCCAAAGAAAAAACATCGAGGTAAAAGGATTGAGAGGGAAGAGGAAGAAGA AGAGGAAGCCCTTCCTTTAGATATGATGGATGAAGATGACTTACAGTTAATGAAAGATTT AGGACAAAGAGCATCTTTTCTGACAAGAGATCTTTCTTCTAGTGAGCCTGTTCACGCCAA GAAGCGAAAGCATGAGCGTGTTATTGATAAATATGAAAAGATACCCAGAACTCTGCAAAC TGCATCAGAGAAGGAACTGATTCACTTGCTTCCTATCAAAGATAAAAGTGGCATAATCCC ACAGACCAGAGAGAAGCCAGGTGACTCTGATCAGCCCGTGTAGTCCGTATTGCCTTTTAT CCGTATCTACCAAAAGGGGGTAGCCGCAGTTAGTCATATAGCAAGGTTGATGATTTTGGC TGGAAATAAAGATGATTATCTCAGGTGCTTGGTGCCACCTGTGAACAGCTGAAGCCTCAA GGTTAGAGTGATCTTTTCAGAGTATTTCATTCTAACTTACGTTGTTTCTAAAACTAGAGC ATATTGGTCATCCTTTATTGGCTTTTTTCTTACATGTATTTTTTGAGA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCTTCCGGCCGACGGTGTTGCTTGTTTTGCACGTGTGTCGCCCCTTTGGAATTCCTGGAT TACCTTTGCTCTTGGCGAATTTGTCTGGCCGGGATTCCGTGCAGACTTAAGGATGAAGGC TAGACGAAATAAAAAACAGGTCCCAAGCTTTCGGAAATTGCTAAAAACTAGTAAAGTCAA GCTTGAAAACAAACTAAAGAACAAACAACTTAAACAACAAAGCACTCAGAAGAAATACCG AAAAGAACAGAGGAAACTAAGGCAAGCTGTAAAAGATGCTGTGTCTAAGAAACCTATTCC ATTGGAGGACCCAAAGAAAAAACATCGAGGTAAAAGGATTGAGAGGGAAGAGGAAGAAGA AGAGGAAGCCCTTCCTTTAGATATGATGGATGAAGATGACTTACAGTTAATGAAAGATTT AGGACAAAGAGCATCTTTTCTGACAAGAGATCTTTCTTCTAGTGAGCCTGTTCACGCCAA GAAGCGAAAGCATGAGCGTGTTATTGATAAATATGAAAAGATACCCAGAACTCTGCAAAC TGCATCAGAGAAGGAACTGATTCACTTGCTTCCTATCAAAGATAAAAGTGGCATAATCCC ACAGACCAGAGAGAAGCCAGGTGACTCTGATCAGCCCGTGTAGTCCGTATTGCCTTTTAT CCGTATCTACCAAAAGGGGGTAGCCGCAGTTAGTCATATAGCAAGGTTGATGATTTTGGC TGGAAATAAAGATGATTATCTCAGGTGCTTGGTGCCACCTGTGAACAGCTGAAGCCTCAA GGTTAGAGTGATCTTTTCAGAGTATTTCATTCTAACTTACGTTGTTTCTAAAACTAGAGC ATATTGGTCATCCTTTATTGGCTTTTTTCTTACATGTATTTTTTGAGA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 516-635, + strand, RNAz p=0.59781 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 516-635, + strand, RNAz p=0.59781 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of BC049850, + |
| Aligned organism(s): 26 entry(ies) | More info |
| Aligned organism(s): 26 entry(ies) | Help | Less info |
| 3-120, gnl|bosTau2|chr18 (24516020-24515901) | |
| 3-120, gnl|Hg17|chr10 (96112696-96112578) | |
| 3-120, gnl|Mm7|chr19 (38519895-38519778) | |
| 122-333, gnl|bosTau2|chr18 (24514966-24514755) | |
| 122-333, gnl|canFam2|chr28 (11517019-11517221) | |
| 122-333, gnl|danRer3|chrNA (7405183-7405382) | |
| 122-333, gnl|dasNov1|scaffold_5846 (32073-31873) | |
| 122-333, gnl|fr1|chrUn (300983690-300983492) | |
| 122-333, gnl|galGal2|chr6 (18989053-18989253) | |
| 122-333, gnl|hg17|chr10 (96111409-96111611) | |
| 122-333, gnl|Hg17|chr10 (96111619-96111408) | |
| 122-333, gnl|loxAfr1|scaffold_2117 (36273-36476) | |
| 122-333, gnl|mm7|chr19 (38518619-38518821) | |
| 122-333, gnl|Mm7|chr19 (38518829-38518618) | |
| 122-333, gnl|monDom2|scaffold_14 (28214188-28213986) | |
| 122-333, gnl|oryCun1|scaffold_133539 (583-381) | |
| 122-333, gnl|panTro1|chr8 (97867190-97867392) | |
| 122-333, gnl|rheMac2|chr9 (93822602-93822804) | |
| 122-333, gnl|rn3|chr1 (243232559-243232761) | |
| 122-333, gnl|tetNig1|chrUn_random (139487696-139487497) | |
| 122-333, gnl|xenTro1|scaffold_180 (1293212-1293412) | |
| 447-642, gnl|bosTau2|chr18 (24511099-24510904) | |
| 447-642, gnl|Hg17|chr10 (96107105-96106898) | |
| 447-642, gnl|Mm7|chr19 (38515539-38515350) | |
| 650-888, gnl|bosTau2|chr18 (24510835-24510589) | |
| 650-888, gnl|Hg17|chr10 (96106833-96106608) |
| Aligned organism(s): 26 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 3-120, gnl|bosTau2|chr18 (24516020-24515901) | |
| 3-120, gnl|Hg17|chr10 (96112696-96112578) | |
| 3-120, gnl|Mm7|chr19 (38519895-38519778) | |
| 122-333, gnl|bosTau2|chr18 (24514966-24514755) | |
| 122-333, gnl|canFam2|chr28 (11517019-11517221) | |
| 122-333, gnl|danRer3|chrNA (7405183-7405382) | |
| 122-333, gnl|dasNov1|scaffold_5846 (32073-31873) | |
| 122-333, gnl|fr1|chrUn (300983690-300983492) | |
| 122-333, gnl|galGal2|chr6 (18989053-18989253) | |
| 122-333, gnl|hg17|chr10 (96111409-96111611) | |
| 122-333, gnl|Hg17|chr10 (96111619-96111408) | |
| 122-333, gnl|loxAfr1|scaffold_2117 (36273-36476) | |
| 122-333, gnl|mm7|chr19 (38518619-38518821) | |
| 122-333, gnl|Mm7|chr19 (38518829-38518618) | |
| 122-333, gnl|monDom2|scaffold_14 (28214188-28213986) | |
| 122-333, gnl|oryCun1|scaffold_133539 (583-381) | |
| 122-333, gnl|panTro1|chr8 (97867190-97867392) | |
| 122-333, gnl|rheMac2|chr9 (93822602-93822804) | |
| 122-333, gnl|rn3|chr1 (243232559-243232761) | |
| 122-333, gnl|tetNig1|chrUn_random (139487696-139487497) | |
| 122-333, gnl|xenTro1|scaffold_180 (1293212-1293412) | |
| 447-642, gnl|bosTau2|chr18 (24511099-24510904) | |
| 447-642, gnl|Hg17|chr10 (96107105-96106898) | |
| 447-642, gnl|Mm7|chr19 (38515539-38515350) | |
| 650-888, gnl|bosTau2|chr18 (24510835-24510589) | |
| 650-888, gnl|Hg17|chr10 (96106833-96106608) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ese (0.126502) |