Non-Coding RNA Search

Ss1.1-rese40c_e16.5.5

Sequence:


               
               CTGCCGAAGATGGCGGAGGGGCAGCAGGTGCTGGTGCTCGATGGCCGAGGCCATCTCCTG
GGCCGCCTGGCGGCCATTGTGGCCAAGCAGGTACTTCTGGGCCGGAAGGTGGTGGTTGTG
CGCTGTGAGGGCATCAACATTTCTGGCAATTTTTACAGAAACAAACTGAAGTACCTGGCC
TTCCTCCGCAAGCGCATGAATACCAACCCGTCCCGAGGCCCCTACCACTTCCGAGCCCCC
AGCCGCATCTTCTGGCGGACGGTGCGAGGCATGCTGCCCCATAAGACCAAGCGAGGGCAG
GCCGCCCTGGACCGTCTCAAGGTGTTCGATGGGATCCCGCCACCCTATGACAAGAAAAAG
CGCATGGTGGTGCCTGCCGCCCTCAAGGTGGTGCGTCTGAAGCCTACGCGGAAGTTCGCC
TACCTGGGACGCCTGGCTCATGAGGTTGGCTGGAAGTACCAGGCAGTTACAGCCACCCTG
GAGGAGAAGAGGAAGGAGAAGGCCAAGATCCATTACCGCAAGAAGAAGCAGCTCATGAGG
CTGCGGAAGCAGGCGGAAAAGAACGTAGAGAAGAAGATCGACAGGTTCACGGAGGTCCTC
AAGACTCATGGATTCCTAGTCTGAGCACAATAAAATTGACTGTTTATTCTTAAAAAAAAA
CCTGGCCTGCCCTTCCTCCATCGCCACCCTAGGATGTGGGGGACCTCCAGGGGCCACGGG
CAGCCTGGAGCTTAGGAGCCTGGGTGTAGCCAAGGGGCCTTGTTTACTGCTGGTCGAGAA
AGGCCTTTCTAGAAGTACAGGGCCGAGGGCTGTGCAGGTGCAGTGTTGTTGGCAGGAGTG
AACCAAGAGGAAGGGCCTCCACTTGTGCCCAGGGCATCTGTTAAACCTTCCGGCGGGCGG
ATACCATACTCTGCAGCTGTTAGGGGGTGAGAGGCTGCCTGGCCAGGCAGCGTGAGTCGG
GGGCTCTTGCGCAAAGGTGCTGTGGAAACAGGTGCAGCCAAAGGGTCACAGGGCATCTCC
CCTATACATTGTGATCCTGAACTAATAAATTATTTTTGAAGGAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGCCGAAGATGGCGGAGGGGCAGCAGGTGCTGGTGCTCGATGGCCGAGGCCATCTCCTG
GGCCGCCTGGCGGCCATTGTGGCCAAGCAGGTACTTCTGGGCCGGAAGGTGGTGGTTGTG
CGCTGTGAGGGCATCAACATTTCTGGCAATTTTTACAGAAACAAACTGAAGTACCTGGCC
TTCCTCCGCAAGCGCATGAATACCAACCCGTCCCGAGGCCCCTACCACTTCCGAGCCCCC
AGCCGCATCTTCTGGCGGACGGTGCGAGGCATGCTGCCCCATAAGACCAAGCGAGGGCAG
GCCGCCCTGGACCGTCTCAAGGTGTTCGATGGGATCCCGCCACCCTATGACAAGAAAAAG
CGCATGGTGGTGCCTGCCGCCCTCAAGGTGGTGCGTCTGAAGCCTACGCGGAAGTTCGCC
TACCTGGGACGCCTGGCTCATGAGGTTGGCTGGAAGTACCAGGCAGTTACAGCCACCCTG
GAGGAGAAGAGGAAGGAGAAGGCCAAGATCCATTACCGCAAGAAGAAGCAGCTCATGAGG
CTGCGGAAGCAGGCGGAAAAGAACGTAGAGAAGAAGATCGACAGGTTCACGGAGGTCCTC
AAGACTCATGGATTCCTAGTCTGAGCACAATAAAATTGACTGTTTATTCTTAAAAAAAAA
CCTGGCCTGCCCTTCCTCCATCGCCACCCTAGGATGTGGGGGACCTCCAGGGGCCACGGG
CAGCCTGGAGCTTAGGAGCCTGGGTGTAGCCAAGGGGCCTTGTTTACTGCTGGTCGAGAA
AGGCCTTTCTAGAAGTACAGGGCCGAGGGCTGTGCAGGTGCAGTGTTGTTGGCAGGAGTG
AACCAAGAGGAAGGGCCTCCACTTGTGCCCAGGGCATCTGTTAAACCTTCCGGCGGGCGG
ATACCATACTCTGCAGCTGTTAGGGGGTGAGAGGCTGCCTGGCCAGGCAGCGTGAGTCGG
GGGCTCTTGCGCAAAGGTGCTGTGGAAACAGGTGCAGCCAAAGGGTCACAGGGCATCTCC
CCTATACATTGTGATCCTGAACTAATAAATTATTTTTGAAGGAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q7M2Y2_BOVIN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q7M2Y2_BOVIN

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               1-330, gnl|bosTau2|chr14 (13930624-13930292)
               

               
               1-330, gnl|Hg17|chr5 (83078573-83078226)
               

               
               1-330, gnl|Mm7|chr15 (38199971-38200299)
               


               
               537-761, gnl|bosTau2|chr18 (48630485-48630706)
               

               
               537-761, gnl|Hg17|chr19 (54686797-54687029)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-330, gnl|bosTau2|chr14 (13930624-13930292)
               

               
               1-330, gnl|Hg17|chr5 (83078573-83078226)
               

               
               1-330, gnl|Mm7|chr15 (38199971-38200299)
               


               
               537-761, gnl|bosTau2|chr18 (48630485-48630706)
               

               
               537-761, gnl|Hg17|chr19 (54686797-54687029)

Expressed library(ies): 86 entry(ies)

More info

Expressed library(ies): 86 entry(ies)

Help | Less info


               
               elu (8.47784)
               

               
               fty (5.97855)
               

               
               cje (5.78321)
               

               
               eep (5.51538)
               

               
               cmu (5.21901)
               

               
               mcp (5.11945)
               

               
               nms (4.27716)
               

               
               lnt (4.26925)
               

               
               cag (4.23344)
               

               
               csp (4.02966)
               

               
               nca (3.83247)
               

               
               ese (3.79507)
               

               
               amn (3.7594)
               

               
               eje (3.75568)
               

               
               cly (3.61925)
               

               
               nep (3.49457)
               

               
               ecc (3.45105)
               

               
               jca (3.4188)
               

               
               med (3.37131)
               

               
               cov (3.30382)
               

               
               eru (3.2413)
               

               
               ill (3.16067)
               

               
               pty (3.13972)
               

               
               cut (3.05862)
               

               
               che (2.99891)
               

               
               ton (2.9835)
               

               
               cst (2.94076)
               

               
               duo (2.93762)
               

               
               col (2.92512)
               

               
               pgl (2.72512)
               

               
               nlu (2.49185)
               

               
               nje (2.4888)
               

               
               hlv (2.36736)
               

               
               cki (2.31328)
               

               
               ece (2.29305)
               

               
               cga (2.23277)
               

               
               ebs (2.12942)
               

               
               fli (2.02881)
               

               
               sto (1.97806)
               

               
               fce (1.90114)
               

               
               nmm (1.85923)
               

               
               hea (1.84049)
               

               
               nbm (1.78784)
               

               
               jej (1.78059)
               

               
               bla (1.74086)
               

               
               fbs (1.57812)
               

               
               fcc (1.38449)
               

               
               eye (1.36402)
               

               
               nco (1.29387)
               

               
               csk (1.26671)
               

               
               cli (1.22249)
               

               
               cbe (1.19617)
               

               
               fat (1.17942)
               

               
               ute (1.06228)
               

               
               ova (1.03306)
               

               
               ldo (0.970026)
               

               
               sme (0.91631)
               

               
               sin (0.874738)
               

               
               mas (0.84122)
               

               
               ssp (0.813118)
               

               
               thg (0.760746)
               

               
               hyp (0.714184)
               

               
               mgp (0.692042)
               

               
               fhi (0.678311)
               

               
               eli (0.607257)
               

               
               clu (0.598229)
               

               
               lin (0.582411)
               

               
               ste (0.540833)
               

               
               lyg (0.532411)
               

               
               pro (0.512033)
               

               
               spc (0.453463)
               

               
               ski (0.440205)
               

               
               spl (0.429553)
               

               
               aor (0.390549)
               

               
               sag (0.36543)
               

               
               mgm (0.360685)
               

               
               gul (0.355177)
               

               
               mga (0.32041)
               

               
               tbr (0.308356)
               

               
               pla (0.267344)
               

               
               sug (0.254582)
               

               
               tra (0.246184)
               

               
               pan (0.23596)
               

               
               rec (0.17307)
               

               
               isp (0.150376)
               

               
               kid (0.129735)

Expressed library(ies): 86 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               elu (8.47784)
               

               
               fty (5.97855)
               

               
               cje (5.78321)
               

               
               eep (5.51538)
               

               
               cmu (5.21901)
               

               
               mcp (5.11945)
               

               
               nms (4.27716)
               

               
               lnt (4.26925)
               

               
               cag (4.23344)
               

               
               csp (4.02966)
               

               
               nca (3.83247)
               

               
               ese (3.79507)
               

               
               amn (3.7594)
               

               
               eje (3.75568)
               

               
               cly (3.61925)
               

               
               nep (3.49457)
               

               
               ecc (3.45105)
               

               
               jca (3.4188)
               

               
               med (3.37131)
               

               
               cov (3.30382)
               

               
               eru (3.2413)
               

               
               ill (3.16067)
               

               
               pty (3.13972)
               

               
               cut (3.05862)
               

               
               che (2.99891)
               

               
               ton (2.9835)
               

               
               cst (2.94076)
               

               
               duo (2.93762)
               

               
               col (2.92512)
               

               
               pgl (2.72512)
               

               
               nlu (2.49185)
               

               
               nje (2.4888)
               

               
               hlv (2.36736)
               

               
               cki (2.31328)
               

               
               ece (2.29305)
               

               
               cga (2.23277)
               

               
               ebs (2.12942)
               

               
               fli (2.02881)
               

               
               sto (1.97806)
               

               
               fce (1.90114)
               

               
               nmm (1.85923)
               

               
               hea (1.84049)
               

               
               nbm (1.78784)
               

               
               jej (1.78059)
               

               
               bla (1.74086)
               

               
               fbs (1.57812)
               

               
               fcc (1.38449)
               

               
               eye (1.36402)
               

               
               nco (1.29387)
               

               
               csk (1.26671)
               

               
               cli (1.22249)
               

               
               cbe (1.19617)
               

               
               fat (1.17942)
               

               
               ute (1.06228)
               

               
               ova (1.03306)
               

               
               ldo (0.970026)
               

               
               sme (0.91631)
               

               
               sin (0.874738)
               

               
               mas (0.84122)
               

               
               ssp (0.813118)
               

               
               thg (0.760746)
               

               
               hyp (0.714184)
               

               
               mgp (0.692042)
               

               
               fhi (0.678311)
               

               
               eli (0.607257)
               

               
               clu (0.598229)
               

               
               lin (0.582411)
               

               
               ste (0.540833)
               

               
               lyg (0.532411)
               

               
               pro (0.512033)
               

               
               spc (0.453463)
               

               
               ski (0.440205)
               

               
               spl (0.429553)
               

               
               aor (0.390549)
               

               
               sag (0.36543)
               

               
               mgm (0.360685)
               

               
               gul (0.355177)
               

               
               mga (0.32041)
               

               
               tbr (0.308356)
               

               
               pla (0.267344)
               

               
               sug (0.254582)
               

               
               tra (0.246184)
               

               
               pan (0.23596)
               

               
               rec (0.17307)
               

               
               isp (0.150376)
               

               
               kid (0.129735)

	1-330, gnl\|bosTau2\|chr14 (13930624-13930292)
	1-330, gnl\|Hg17\|chr5 (83078573-83078226)
	1-330, gnl\|Mm7\|chr15 (38199971-38200299)

	537-761, gnl\|bosTau2\|chr18 (48630485-48630706)
	537-761, gnl\|Hg17\|chr19 (54686797-54687029)

	elu (8.47784)
	fty (5.97855)
	cje (5.78321)
	eep (5.51538)
	cmu (5.21901)
	mcp (5.11945)
	nms (4.27716)
	lnt (4.26925)
	cag (4.23344)
	csp (4.02966)
	nca (3.83247)
	ese (3.79507)
	amn (3.7594)
	eje (3.75568)
	cly (3.61925)
	nep (3.49457)
	ecc (3.45105)
	jca (3.4188)
	med (3.37131)
	cov (3.30382)
	eru (3.2413)
	ill (3.16067)
	pty (3.13972)
	cut (3.05862)
	che (2.99891)
	ton (2.9835)
	cst (2.94076)
	duo (2.93762)
	col (2.92512)
	pgl (2.72512)
	nlu (2.49185)
	nje (2.4888)
	hlv (2.36736)
	cki (2.31328)
	ece (2.29305)
	cga (2.23277)
	ebs (2.12942)
	fli (2.02881)
	sto (1.97806)
	fce (1.90114)
	nmm (1.85923)
	hea (1.84049)
	nbm (1.78784)
	jej (1.78059)
	bla (1.74086)
	fbs (1.57812)
	fcc (1.38449)
	eye (1.36402)
	nco (1.29387)
	csk (1.26671)
	cli (1.22249)
	cbe (1.19617)
	fat (1.17942)
	ute (1.06228)
	ova (1.03306)
	ldo (0.970026)
	sme (0.91631)
	sin (0.874738)
	mas (0.84122)
	ssp (0.813118)
	thg (0.760746)
	hyp (0.714184)
	mgp (0.692042)
	fhi (0.678311)
	eli (0.607257)
	clu (0.598229)
	lin (0.582411)
	ste (0.540833)
	lyg (0.532411)
	pro (0.512033)
	spc (0.453463)
	ski (0.440205)
	spl (0.429553)
	aor (0.390549)
	sag (0.36543)
	mgm (0.360685)
	gul (0.355177)
	mga (0.32041)
	tbr (0.308356)
	pla (0.267344)
	sug (0.254582)
	tra (0.246184)
	pan (0.23596)
	rec (0.17307)
	isp (0.150376)
	kid (0.129735)