Non-Coding RNA Search

Ss1.1-rese40c_f22.5

Sequence:


               
               TGGTCCTCCCAATCCTAGGCCCATTGGCTTGGGCCCTGGACCAGGTCCCAATCTGAGATC
AGGTTTCGTAGGTACAAATCCTGCCCCAAGGTCAGGAATGTTTCCAGGCCCCAGCCTTGG
GCCCAACCCAAGGGCAAGTGGCCTGGGCCCAGGCCTTGGGCCTAACCCAAGAGCAAGTGG
CCTAGGCCCTGGCCCTAATCTGGACACCAGAGCAGGTGGGCTCTTGGGCACAGGATCTGG
TCTTAACTTAAGAATGGCTGGACCTCAAGGCCTAGATCTTGCTCCCATTCTAAGAGCAGC
AGGTCTTTTAGGAGCAAATTCAGCTTCTTTCTCACAGGCCTCTGGAAACATGGGCACAAG
CCCATCTTCCATGGCCAGAATACCTGGCCCCATAGGCCCAAACTCGGGTCCTGGCTCTCG
GGGAATTGGCCTTCCAGGGCCAAATCCATCTCCCATGTCAAGGGGCCCTGGCCCCATCGG
CCCTAATTCAACGCATTTTTCAAGGCCAGCAGGCCCCATGGGAGTAAATGCTAATCCTTT
TCCAAGGGGGACAGGTTCAGGGGGACTGAACCCAGCTACCTTCTCTCAGTCTTCTAACAC
ATGGGCTTCCAACCCAGCTAATTTCCAGAGGTCTGCTGGTCTGCAGGGCTCAAATCCAGC
AATTTTCCCAAGAGCCTCTGGACCGCTAGGGCCCAACCCAGCTAATTTCCCGAGGGCCAC
TGGTTTACAGGGTCCAAGTCCAGCTACCTTCCCAAGGTCTACTGGCCCATTAGGCCCTGG
TCAGGTTACTTTCCCCAGGTCAGCTCCTGGGCCACTAGGCTCTTCTCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGTCCTCCCAATCCTAGGCCCATTGGCTTGGGCCCTGGACCAGGTCCCAATCTGAGATC
AGGTTTCGTAGGTACAAATCCTGCCCCAAGGTCAGGAATGTTTCCAGGCCCCAGCCTTGG
GCCCAACCCAAGGGCAAGTGGCCTGGGCCCAGGCCTTGGGCCTAACCCAAGAGCAAGTGG
CCTAGGCCCTGGCCCTAATCTGGACACCAGAGCAGGTGGGCTCTTGGGCACAGGATCTGG
TCTTAACTTAAGAATGGCTGGACCTCAAGGCCTAGATCTTGCTCCCATTCTAAGAGCAGC
AGGTCTTTTAGGAGCAAATTCAGCTTCTTTCTCACAGGCCTCTGGAAACATGGGCACAAG
CCCATCTTCCATGGCCAGAATACCTGGCCCCATAGGCCCAAACTCGGGTCCTGGCTCTCG
GGGAATTGGCCTTCCAGGGCCAAATCCATCTCCCATGTCAAGGGGCCCTGGCCCCATCGG
CCCTAATTCAACGCATTTTTCAAGGCCAGCAGGCCCCATGGGAGTAAATGCTAATCCTTT
TCCAAGGGGGACAGGTTCAGGGGGACTGAACCCAGCTACCTTCTCTCAGTCTTCTAACAC
ATGGGCTTCCAACCCAGCTAATTTCCAGAGGTCTGCTGGTCTGCAGGGCTCAAATCCAGC
AATTTTCCCAAGAGCCTCTGGACCGCTAGGGCCCAACCCAGCTAATTTCCCGAGGGCCAC
TGGTTTACAGGGTCCAAGTCCAGCTACCTTCCCAAGGTCTACTGGCCCATTAGGCCCTGG
TCAGGTTACTTTCCCCAGGTCAGCTCCTGGGCCACTAGGCTCTTCTCC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q8R5A5_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q8R5A5_MOUSE

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               2-560, - strand, RNAz p=0.998746
               

               
               601-828, - strand, RNAz p=0.986827

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               2-560, - strand, RNAz p=0.998746
               

               
               601-828, - strand, RNAz p=0.986827

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               8-167, - strand, RNAmicro p=0.999998
               

               
               662-786, + strand, RNAmicro p=0.984019

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               8-167, - strand, RNAmicro p=0.999998
               

               
               662-786, + strand, RNAmicro p=0.984019

Similar Transcript(s): 12 entry(ies)

More info

Similar Transcript(s): 12 entry(ies)

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               146-155, BX460678 Homo sapiens FETAL BRAIN Homo sapiens cDNA clone 
(emb|BX460678.2|), blast E-value=8e-25, identity=87.3% 
               

               
               146-155, BX463936 Homo sapiens FETAL BRAIN Homo sapiens cDNA clone 
(emb|BX463936.2|), blast E-value=8e-25, identity=87.3% 
               

               
               146-155, RC6-ST0198-081199-021-B08 ST0198 Homo sapiens cDNA, mRNA sequence 
(gb|AW814061.1|), blast E-value=2e-34, identity=87.66% 
               

               
               146-155, 602422927F1 NIH_MGC_14 Homo sapiens cDNA clone IMAGE (gb|BG323898.1|), 
blast E-value=3e-18, identity=89.66% 
               

               
               146-155, AGENCOURT_7897008 NIH_MGC_72 Homo sapiens cDNA clone IMAGE 
(gb|BQ425793.1|), blast E-value=2e-34, identity=87.66% 
               

               
               2-428, LB02746.CR_M24 GC_BGC-27 Bos taurus cDNA clone IMAGE (gb|EE347355.1|), 
blast E-value=0, identity=91.57% 
               

               
               604-822, AV666198 Bos taurus adipocyte cell line Bos taurus cDNA clone 
(dbj|AV666198.1|), blast E-value=0, identity=90.41% 
               

               
               655-825, 89071 MARC 1BOV Bos taurus cDNA 5', mRNA sequence (gb|AW447456.1|), 
blast E-value=0, identity=92.4% 
               

               
               604-825, 488281 MARC 2BOV Bos taurus cDNA 5', mRNA sequence (gb|BM029887.1|), 
blast E-value=0, identity=90.54% 
               

               
               611-812, ILLUMIGEN_MCQ_31213 Katze_MMPB Macaca mulatta cDNA clone IBIUW 
(gb|CN648731.1|), blast E-value=0, identity=90.1% 
               

               
               604-825, LB02828.CR_H18 GC_BGC-28 Bos taurus cDNA clone IMAGE (gb|DV913810.1|), 
blast E-value=0, identity=90.54% 
               

               
               611-825, sh3P0006C07_F.ab1 adult sheep fracture callus 10d Ovis aries cDNA, 
(gb|DY507376.1|), blast E-value=0, identity=91.16%

Similar Transcript(s): 12 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               146-155, BX460678 Homo sapiens FETAL BRAIN Homo sapiens cDNA clone 
(emb|BX460678.2|), blast E-value=8e-25, identity=87.3% 
               

               
               146-155, BX463936 Homo sapiens FETAL BRAIN Homo sapiens cDNA clone 
(emb|BX463936.2|), blast E-value=8e-25, identity=87.3% 
               

               
               146-155, RC6-ST0198-081199-021-B08 ST0198 Homo sapiens cDNA, mRNA sequence 
(gb|AW814061.1|), blast E-value=2e-34, identity=87.66% 
               

               
               146-155, 602422927F1 NIH_MGC_14 Homo sapiens cDNA clone IMAGE (gb|BG323898.1|), 
blast E-value=3e-18, identity=89.66% 
               

               
               146-155, AGENCOURT_7897008 NIH_MGC_72 Homo sapiens cDNA clone IMAGE 
(gb|BQ425793.1|), blast E-value=2e-34, identity=87.66% 
               

               
               2-428, LB02746.CR_M24 GC_BGC-27 Bos taurus cDNA clone IMAGE (gb|EE347355.1|), 
blast E-value=0, identity=91.57% 
               

               
               604-822, AV666198 Bos taurus adipocyte cell line Bos taurus cDNA clone 
(dbj|AV666198.1|), blast E-value=0, identity=90.41% 
               

               
               655-825, 89071 MARC 1BOV Bos taurus cDNA 5', mRNA sequence (gb|AW447456.1|), 
blast E-value=0, identity=92.4% 
               

               
               604-825, 488281 MARC 2BOV Bos taurus cDNA 5', mRNA sequence (gb|BM029887.1|), 
blast E-value=0, identity=90.54% 
               

               
               611-812, ILLUMIGEN_MCQ_31213 Katze_MMPB Macaca mulatta cDNA clone IBIUW 
(gb|CN648731.1|), blast E-value=0, identity=90.1% 
               

               
               604-825, LB02828.CR_H18 GC_BGC-28 Bos taurus cDNA clone IMAGE (gb|DV913810.1|), 
blast E-value=0, identity=90.54% 
               

               
               611-825, sh3P0006C07_F.ab1 adult sheep fracture callus 10d Ovis aries cDNA, 
(gb|DY507376.1|), blast E-value=0, identity=91.16%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-828, gnl|bosTau2|chr18 (13999247-14000073)
               

               
               2-828, gnl|Hg17|chr16 (67711247-67710475)
               

               
               2-828, gnl|Mm7|chr8 (105485884-105485058)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-828, gnl|bosTau2|chr18 (13999247-14000073)
               

               
               2-828, gnl|Hg17|chr16 (67711247-67710475)
               

               
               2-828, gnl|Mm7|chr8 (105485884-105485058)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ese (0.126502)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ese (0.126502)

	2-560, - strand, RNAz p=0.998746
	601-828, - strand, RNAz p=0.986827

	8-167, - strand, RNAmicro p=0.999998
	662-786, + strand, RNAmicro p=0.984019

	146-155, BX460678 Homo sapiens FETAL BRAIN Homo sapiens cDNA clone (emb\|BX460678.2\|), blast E-value=8e-25, identity=87.3%
	146-155, BX463936 Homo sapiens FETAL BRAIN Homo sapiens cDNA clone (emb\|BX463936.2\|), blast E-value=8e-25, identity=87.3%
	146-155, RC6-ST0198-081199-021-B08 ST0198 Homo sapiens cDNA, mRNA sequence (gb\|AW814061.1\|), blast E-value=2e-34, identity=87.66%
	146-155, 602422927F1 NIH_MGC_14 Homo sapiens cDNA clone IMAGE (gb\|BG323898.1\|), blast E-value=3e-18, identity=89.66%
	146-155, AGENCOURT_7897008 NIH_MGC_72 Homo sapiens cDNA clone IMAGE (gb\|BQ425793.1\|), blast E-value=2e-34, identity=87.66%
	2-428, LB02746.CR_M24 GC_BGC-27 Bos taurus cDNA clone IMAGE (gb\|EE347355.1\|), blast E-value=0, identity=91.57%
	604-822, AV666198 Bos taurus adipocyte cell line Bos taurus cDNA clone (dbj\|AV666198.1\|), blast E-value=0, identity=90.41%
	655-825, 89071 MARC 1BOV Bos taurus cDNA 5', mRNA sequence (gb\|AW447456.1\|), blast E-value=0, identity=92.4%
	604-825, 488281 MARC 2BOV Bos taurus cDNA 5', mRNA sequence (gb\|BM029887.1\|), blast E-value=0, identity=90.54%
	611-812, ILLUMIGEN_MCQ_31213 Katze_MMPB Macaca mulatta cDNA clone IBIUW (gb\|CN648731.1\|), blast E-value=0, identity=90.1%
	604-825, LB02828.CR_H18 GC_BGC-28 Bos taurus cDNA clone IMAGE (gb\|DV913810.1\|), blast E-value=0, identity=90.54%
	611-825, sh3P0006C07_F.ab1 adult sheep fracture callus 10d Ovis aries cDNA, (gb\|DY507376.1\|), blast E-value=0, identity=91.16%

	2-828, gnl\|bosTau2\|chr18 (13999247-14000073)
	2-828, gnl\|Hg17\|chr16 (67711247-67710475)
	2-828, gnl\|Mm7\|chr8 (105485884-105485058)