Ss1.1-reye1601b_e17.5
|
ATAGGGGTTGAATATAAAAAGCCGGCCGAGAGAGCTGTCCAGGTCAGACGCGCTTCTGCC
TCTGCGCTGAGACCAGCGCCGCCGGGTCCCCGGTCTCCACTGCGGTCCCCGCGCGCCACC
ACCGCCGCCGCGTGCGTCCTCGGACCGCTCCCACTGCCTTCTCTCCCGGCAGAAACTTCC
TTCTCCCGATTAAAGAGCACTCAGGCTGAAGGATCATTTTGAGATCTGAATAACCCGAAG
CGCTTGGAAGGAACCGAAGCCATTTTTCTGCCTTTTTCCCCCCGCTTTCGGGTTTAGTTC
GCAGGGGGAGGATTTTGATCCTTTTTTTTTTCAGAATGGATTATTTCCCCATGATTATCG
CTCTGCTGTTTGTGGCTTTCCAAGGAGCTCCAGAAACAGCGGTCCTGGGCGCCGAGCTCA
GCCCGGGAGCCGAGAGCCAAGGGGAGACGCCCTCTCCCCATGCATCCTGGAGGCCCCGTC
GGTCCAAGCGCTGCTCCTGCTCTTCCCTGATGGATAAAGAGTGTGTCTACTTCTGCCACC
TGGACATCATCTGGGTCAACACTCCAGAACACATTGTCCCATACGGACTTGGAAGCCCTT
CTAGGTCCAGGCGATCCTTAAAGGATTTGTTTCCTGCAAAGGCAGCAGACCGCAGGGATA
GATGCCAGTGTGCCAGCCAAAAAGACAAGAAGTGCT
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
ATAGGGGTTGAATATAAAAAGCCGGCCGAGAGAGCTGTCCAGGTCAGACGCGCTTCTGCC
TCTGCGCTGAGACCAGCGCCGCCGGGTCCCCGGTCTCCACTGCGGTCCCCGCGCGCCACC
ACCGCCGCCGCGTGCGTCCTCGGACCGCTCCCACTGCCTTCTCTCCCGGCAGAAACTTCC
TTCTCCCGATTAAAGAGCACTCAGGCTGAAGGATCATTTTGAGATCTGAATAACCCGAAG
CGCTTGGAAGGAACCGAAGCCATTTTTCTGCCTTTTTCCCCCCGCTTTCGGGTTTAGTTC
GCAGGGGGAGGATTTTGATCCTTTTTTTTTTCAGAATGGATTATTTCCCCATGATTATCG
CTCTGCTGTTTGTGGCTTTCCAAGGAGCTCCAGAAACAGCGGTCCTGGGCGCCGAGCTCA
GCCCGGGAGCCGAGAGCCAAGGGGAGACGCCCTCTCCCCATGCATCCTGGAGGCCCCGTC
GGTCCAAGCGCTGCTCCTGCTCTTCCCTGATGGATAAAGAGTGTGTCTACTTCTGCCACC
TGGACATCATCTGGGTCAACACTCCAGAACACATTGTCCCATACGGACTTGGAAGCCCTT
CTAGGTCCAGGCGATCCTTAAAGGATTTGTTTCCTGCAAAGGCAGCAGACCGCAGGGATA
GATGCCAGTGTGCCAGCCAAAAAGACAAGAAGTGCT
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
1-399, gnl|bosTau2|chr23 (39319952-39319534) |
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1-399, gnl|Hg17|chr6 (12398536-12398912) |
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1-399, gnl|Mm7|chr13 (41742339-41742721) |
| |
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570-696, gnl|bosTau2|chr23 (39316459-39316333) |
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570-696, gnl|canFam2|chr35 (14821281-14821488) |
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570-696, gnl|dasNov1|scaffold_9670 (38040-37834) |
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570-696, gnl|echTel1|scaffold_316270 (42900-43107) |
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570-696, gnl|galGal2|chr2 (62423871-62423650) |
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570-696, gnl|hg17|chr6 (12402136-12402339) |
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570-696, gnl|Hg17|chr6 (12402161-12402284) |
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570-696, gnl|loxAfr1|scaffold_16327 (23685-23891) |
|
570-696, gnl|mm7|chr13 (41745687-41745891) |
|
570-696, gnl|Mm7|chr13 (41745710-41745836) |
|
570-696, gnl|monDom2|scaffold_3 (99687450-99687656) |
|
570-696, gnl|oryCun1|scaffold_113838 (3997-4203) |
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570-696, gnl|panTro1|chr5 (12688927-12689130) |
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570-696, gnl|rheMac2|chr4 (12271174-12271378) |
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570-696, gnl|rn3|chr17 (28309244-28309038) |
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570-696, gnl|tetNig1|chrUn_random (105180404-105180584) |
|
570-696, gnl|xenTro1|scaffold_278 (198024-197826) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
1-399, gnl|bosTau2|chr23 (39319952-39319534) |
|
1-399, gnl|Hg17|chr6 (12398536-12398912) |
|
1-399, gnl|Mm7|chr13 (41742339-41742721) |
| |
|
570-696, gnl|bosTau2|chr23 (39316459-39316333) |
|
570-696, gnl|canFam2|chr35 (14821281-14821488) |
|
570-696, gnl|dasNov1|scaffold_9670 (38040-37834) |
|
570-696, gnl|echTel1|scaffold_316270 (42900-43107) |
|
570-696, gnl|galGal2|chr2 (62423871-62423650) |
|
570-696, gnl|hg17|chr6 (12402136-12402339) |
|
570-696, gnl|Hg17|chr6 (12402161-12402284) |
|
570-696, gnl|loxAfr1|scaffold_16327 (23685-23891) |
|
570-696, gnl|mm7|chr13 (41745687-41745891) |
|
570-696, gnl|Mm7|chr13 (41745710-41745836) |
|
570-696, gnl|monDom2|scaffold_3 (99687450-99687656) |
|
570-696, gnl|oryCun1|scaffold_113838 (3997-4203) |
|
570-696, gnl|panTro1|chr5 (12688927-12689130) |
|
570-696, gnl|rheMac2|chr4 (12271174-12271378) |
|
570-696, gnl|rn3|chr17 (28309244-28309038) |
|
570-696, gnl|tetNig1|chrUn_random (105180404-105180584) |
|
570-696, gnl|xenTro1|scaffold_278 (198024-197826) |
|
nco (0.323468) |
|
eye (0.170503) |
|
nco (0.323468) |
|
eye (0.170503) |