Non-Coding RNA Search

Ss1.1-reye1603b_l11.5

Sequence:


               
               CAAAGTGGGGTCCAAAGCTGGGTCCAACAAAAGCAGTGCTAGTAGCAAATCAGGGGATGG
GAAGACCTCCGTCTGGATTTAATCTGGCTGAGCTTAAAATCTGTGCTTCTCATAGTTTAT
GGTAAGCAGCAGCTCACTGAATAATGACTTCCATTGAGTAAACATTTGGCTCTGGTTGTC
TTCAGGGATGCTGTTGGCTCGTGATCCAAGCTCAGGGGACTCTGAAGGTGGGGCTGGGAC
AAGGGGGAGAGAACGGGAAACACAGCGTTTCTGGACACACGTTCCAGCAGTAATACCGTC
ACAGAACTTTACATTTGTGTCTTCCAGATCTGGAAAAGAAAAGATATATTTAAATCACTC
TTGTTGAACAGTTTTTGTATGTACAGTATTATGATACTTTTTTTTTAGTATGAGAACTTT
TTTGTATTTGTACATTGGACTGCTGTAGTTACACTTTTATATTAAAGGGGAAAAAATCCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAAAGTGGGGTCCAAAGCTGGGTCCAACAAAAGCAGTGCTAGTAGCAAATCAGGGGATGG
GAAGACCTCCGTCTGGATTTAATCTGGCTGAGCTTAAAATCTGTGCTTCTCATAGTTTAT
GGTAAGCAGCAGCTCACTGAATAATGACTTCCATTGAGTAAACATTTGGCTCTGGTTGTC
TTCAGGGATGCTGTTGGCTCGTGATCCAAGCTCAGGGGACTCTGAAGGTGGGGCTGGGAC
AAGGGGGAGAGAACGGGAAACACAGCGTTTCTGGACACACGTTCCAGCAGTAATACCGTC
ACAGAACTTTACATTTGTGTCTTCCAGATCTGGAAAAGAAAAGATATATTTAAATCACTC
TTGTTGAACAGTTTTTGTATGTACAGTATTATGATACTTTTTTTTTAGTATGAGAACTTT
TTTGTATTTGTACATTGGACTGCTGTAGTTACACTTTTATATTAAAGGGGAAAAAATCCT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               1-118, - strand, RNAz p=0.723158
               

               
               358-480, + strand, RNAz p=0.622199

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-118, - strand, RNAz p=0.723158
               

               
               358-480, + strand, RNAz p=0.622199

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-480, gnl|bosTau2|chr19 (37487214-37487701)
               

               
               1-480, gnl|Hg17|chr17 (40237602-40237119)
               

               
               1-480, gnl|Mm7|chr11 (102909107-102908629)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-480, gnl|bosTau2|chr19 (37487214-37487701)
               

               
               1-480, gnl|Hg17|chr17 (40237602-40237119)
               

               
               1-480, gnl|Mm7|chr11 (102909107-102908629)

Expressed library(ies): 5 entry(ies)

More info

Expressed library(ies): 5 entry(ies)

Help | Less info


               
               cte (0.58548)
               

               
               aor (0.195274)
               

               
               eye (0.170503)
               

               
               eep (0.122564)
               

               
               ecc (0.115035)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cte (0.58548)
               

               
               aor (0.195274)
               

               
               eye (0.170503)
               

               
               eep (0.122564)
               

               
               ecc (0.115035)

	1-118, - strand, RNAz p=0.723158
	358-480, + strand, RNAz p=0.622199

	1-480, gnl\|bosTau2\|chr19 (37487214-37487701)
	1-480, gnl\|Hg17\|chr17 (40237602-40237119)
	1-480, gnl\|Mm7\|chr11 (102909107-102908629)

	cte (0.58548)
	aor (0.195274)
	eye (0.170503)
	eep (0.122564)
	ecc (0.115035)