Non-Coding RNA Search

Ss1.1-reye1605b_c12.5

Sequence:


               
               CTTTTGACTGGAATGGACTGATGGGCTTGTCAGAGGATGCATCTGTAGTAGGGCACTGGC
CGGGCAGCTGGGGGTGTGGCATGGGGACAGGGGCTGAGTTTTCAGCAGCAGACACTCTGT
ACAGTTTTTTCAATCCCTGTTTTTGAATAAATATTCTCAGAGACCAGAAAAAAAAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTTTGACTGGAATGGACTGATGGGCTTGTCAGAGGATGCATCTGTAGTAGGGCACTGGC
CGGGCAGCTGGGGGTGTGGCATGGGGACAGGGGCTGAGTTTTCAGCAGCAGACACTCTGT
ACAGTTTTTTCAATCCCTGTTTTTGAATAAATATTCTCAGAGACCAGAAAAAAAAAAAAA
AAAAAAAAAAAA

Aligned organism(s): 12 entry(ies)

More info

Aligned organism(s): 12 entry(ies)

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               1-170, gnl|bosTau2|chr22 (36467375-36467206)
               

               
               1-170, gnl|canFam2|chr20 (40754714-40754147)
               

               
               1-170, gnl|hg17|chr3 (51966506-51967080)
               

               
               1-170, gnl|Hg17|chr3 (51966678-51966510)
               

               
               1-170, gnl|loxAfr1|scaffold_35470 (2406-1829)
               

               
               1-170, gnl|mm7|chr9 (106193466-106192910)
               

               
               1-170, gnl|Mm7|chr9 (106193290-106193460)
               

               
               1-170, gnl|monDom2|scaffold_5 (71759214-71758530)
               

               
               1-170, gnl|oryCun1|scaffold_191230 (3883-4452)
               

               
               1-170, gnl|panTro1|chr2 (53576235-53576809)
               

               
               1-170, gnl|rheMac2|chr2 (84440252-84439678)
               

               
               1-170, gnl|rn3|chr8 (111627236-111626679)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-170, gnl|bosTau2|chr22 (36467375-36467206)
               

               
               1-170, gnl|canFam2|chr20 (40754714-40754147)
               

               
               1-170, gnl|hg17|chr3 (51966506-51967080)
               

               
               1-170, gnl|Hg17|chr3 (51966678-51966510)
               

               
               1-170, gnl|loxAfr1|scaffold_35470 (2406-1829)
               

               
               1-170, gnl|mm7|chr9 (106193466-106192910)
               

               
               1-170, gnl|Mm7|chr9 (106193290-106193460)
               

               
               1-170, gnl|monDom2|scaffold_5 (71759214-71758530)
               

               
               1-170, gnl|oryCun1|scaffold_191230 (3883-4452)
               

               
               1-170, gnl|panTro1|chr2 (53576235-53576809)
               

               
               1-170, gnl|rheMac2|chr2 (84440252-84439678)
               

               
               1-170, gnl|rn3|chr8 (111627236-111626679)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               eye (0.170503)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eye (0.170503)

	1-170, gnl\|bosTau2\|chr22 (36467375-36467206)
	1-170, gnl\|canFam2\|chr20 (40754714-40754147)
	1-170, gnl\|hg17\|chr3 (51966506-51967080)
	1-170, gnl\|Hg17\|chr3 (51966678-51966510)
	1-170, gnl\|loxAfr1\|scaffold_35470 (2406-1829)
	1-170, gnl\|mm7\|chr9 (106193466-106192910)
	1-170, gnl\|Mm7\|chr9 (106193290-106193460)
	1-170, gnl\|monDom2\|scaffold_5 (71759214-71758530)
	1-170, gnl\|oryCun1\|scaffold_191230 (3883-4452)
	1-170, gnl\|panTro1\|chr2 (53576235-53576809)
	1-170, gnl\|rheMac2\|chr2 (84440252-84439678)
	1-170, gnl\|rn3\|chr8 (111627236-111626679)