Non-Coding RNA Search

Ss1.1-reye1605b_l4.5

Sequence:


               
               CAATTCTATAGGGTCAATCACTGATGTACTTCTTTTTGTTTAGAGTACAGAGCTCAGAGT
GAGAGCTGGCTTAGAAAGTCTTCTTAGAAAGACAGGAGTTTCTTACCAAAGACAGGTAAC
TTAGTCACTTTAGAGATACCATCATTTACTTTATTAAAGGGGAAGAATGCCTGTCTGCCT
TTTTGCCCAAAACATCAAGGTTGGCAATGTATTTTTGGAGGCCTAGCAGTACAGACACAA
AACCAATATCCAAACAGCTAGAATTCCTACATAATTCTACAAACTACATAGTAAAACTGC
CCAAGAGAGTCTCAGGATTCCGTGCCCTGTTCTCAGTGTTGCACCTTCCCTGTCAGACTC
CTAGGCATTGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAATTCTATAGGGTCAATCACTGATGTACTTCTTTTTGTTTAGAGTACAGAGCTCAGAGT
GAGAGCTGGCTTAGAAAGTCTTCTTAGAAAGACAGGAGTTTCTTACCAAAGACAGGTAAC
TTAGTCACTTTAGAGATACCATCATTTACTTTATTAAAGGGGAAGAATGCCTGTCTGCCT
TTTTGCCCAAAACATCAAGGTTGGCAATGTATTTTTGGAGGCCTAGCAGTACAGACACAA
AACCAATATCCAAACAGCTAGAATTCCTACATAATTCTACAAACTACATAGTAAAACTGC
CCAAGAGAGTCTCAGGATTCCGTGCCCTGTTCTCAGTGTTGCACCTTCCCTGTCAGACTC
CTAGGCATTGAA

Aligned organism(s): 12 entry(ies)

More info

Aligned organism(s): 12 entry(ies)

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               141-372, gnl|bosTau2|chr10 (22638328-22638094)
               

               
               141-372, gnl|canFam2|chr30 (8838392-8838814)
               

               
               141-372, gnl|dasNov1|scaffold_1674 (4511-3950)
               

               
               141-372, gnl|echTel1|scaffold_301857 (59310-58763)
               

               
               141-372, gnl|hg17|chr15 (36571540-36572169)
               

               
               141-372, gnl|Hg17|chr15 (36572102-36571869)
               

               
               141-372, gnl|loxAfr1|scaffold_6784 (7482-8087)
               

               
               141-372, gnl|mm7|chr2 (117025030-117025560)
               

               
               141-372, gnl|Mm7|chr2 (117025493-117025286)
               

               
               141-372, gnl|panTro1|chr16 (36437299-36437928)
               

               
               141-372, gnl|rheMac2|chr7 (16807844-16808467)
               

               
               141-372, gnl|rn3|chr3 (103271016-103271541)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               141-372, gnl|bosTau2|chr10 (22638328-22638094)
               

               
               141-372, gnl|canFam2|chr30 (8838392-8838814)
               

               
               141-372, gnl|dasNov1|scaffold_1674 (4511-3950)
               

               
               141-372, gnl|echTel1|scaffold_301857 (59310-58763)
               

               
               141-372, gnl|hg17|chr15 (36571540-36572169)
               

               
               141-372, gnl|Hg17|chr15 (36572102-36571869)
               

               
               141-372, gnl|loxAfr1|scaffold_6784 (7482-8087)
               

               
               141-372, gnl|mm7|chr2 (117025030-117025560)
               

               
               141-372, gnl|Mm7|chr2 (117025493-117025286)
               

               
               141-372, gnl|panTro1|chr16 (36437299-36437928)
               

               
               141-372, gnl|rheMac2|chr7 (16807844-16808467)
               

               
               141-372, gnl|rn3|chr3 (103271016-103271541)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               eye (0.170503)
               

               
               clu (0.119646)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eye (0.170503)
               

               
               clu (0.119646)

	141-372, gnl\|bosTau2\|chr10 (22638328-22638094)
	141-372, gnl\|canFam2\|chr30 (8838392-8838814)
	141-372, gnl\|dasNov1\|scaffold_1674 (4511-3950)
	141-372, gnl\|echTel1\|scaffold_301857 (59310-58763)
	141-372, gnl\|hg17\|chr15 (36571540-36572169)
	141-372, gnl\|Hg17\|chr15 (36572102-36571869)
	141-372, gnl\|loxAfr1\|scaffold_6784 (7482-8087)
	141-372, gnl\|mm7\|chr2 (117025030-117025560)
	141-372, gnl\|Mm7\|chr2 (117025493-117025286)
	141-372, gnl\|panTro1\|chr16 (36437299-36437928)
	141-372, gnl\|rheMac2\|chr7 (16807844-16808467)
	141-372, gnl\|rn3\|chr3 (103271016-103271541)