Non-Coding RNA Search

Ss1.1-reye1606b_d2.5

Sequence:


               
               GGTCTGTATCCTGTTTTCTTGGCTCTACCTGTGAATGGTGGCCTTGCAGCCAGGTAGGAT
TATTTGTTTTATCACTCACTGAAAAACTTCAATCACTTACTTGTTTGATTTAAAAGAGGT
AAGATTTTTTTCTTAACAGTAATCAAGGAATACTGCTCAAGAATTTGAAAACAGTTCTAG
AAACTATCATATTATCTCCTGGATGTGTAATGTCAGGTCTCAACTTGATGTTGAGATTCA
GTAACATTCAGCTGACATTCAGTACATCAAGTTGAGACCTGAAATGAATGTCAGCTACAA
AGCTACCAACAATACCCTGACTAGCGTAAAAGCTACATTATATGCATAATGTTAGTCTGA
ATAAGTCTATCAGAAAATGTCTAGCTATAAACCAAAATAATTCAGTTATCCTCAGATGCA
CTCTTAGTTTTATTTTAAGACTTCCAAGATTAATAGGTATGGTATACAGGTTTGCCCCTT
GATAAAACTATCTTTTCTAGTGAACTGTCTCAATGTTTTCTTACAGGTATAACTCAGCAC
TGCTACCTGAGAAAGGAAACATCTTAAATTACTGGATGAGGATTTCTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGTCTGTATCCTGTTTTCTTGGCTCTACCTGTGAATGGTGGCCTTGCAGCCAGGTAGGAT
TATTTGTTTTATCACTCACTGAAAAACTTCAATCACTTACTTGTTTGATTTAAAAGAGGT
AAGATTTTTTTCTTAACAGTAATCAAGGAATACTGCTCAAGAATTTGAAAACAGTTCTAG
AAACTATCATATTATCTCCTGGATGTGTAATGTCAGGTCTCAACTTGATGTTGAGATTCA
GTAACATTCAGCTGACATTCAGTACATCAAGTTGAGACCTGAAATGAATGTCAGCTACAA
AGCTACCAACAATACCCTGACTAGCGTAAAAGCTACATTATATGCATAATGTTAGTCTGA
ATAAGTCTATCAGAAAATGTCTAGCTATAAACCAAAATAATTCAGTTATCCTCAGATGCA
CTCTTAGTTTTATTTTAAGACTTCCAAGATTAATAGGTATGGTATACAGGTTTGCCCCTT
GATAAAACTATCTTTTCTAGTGAACTGTCTCAATGTTTTCTTACAGGTATAACTCAGCAC
TGCTACCTGAGAAAGGAAACATCTTAAATTACTGGATGAGGATTTCTA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               482-588, - strand, RNAz p=0.849064

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               482-588, - strand, RNAz p=0.849064

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               394-588, gnl|bosTau2|chr29 (4350981-4351174)
               

               
               394-588, gnl|canFam2|chr21 (16786095-16785978)
               

               
               394-588, gnl|dasNov1|scaffold_487 (163108-162990)
               

               
               394-588, gnl|echTel1|scaffold_305915 (1203-1134)
               

               
               394-588, gnl|hg17|chr11 (85044880-85044987)
               

               
               394-588, gnl|Hg17|chr11 (85044879-85045062)
               

               
               394-588, gnl|loxAfr1|scaffold_23621 (37599-37496)
               

               
               394-588, gnl|mm7|chr7 (86457952-86457837)
               

               
               394-588, gnl|Mm7|chr7 (86457951-86457760)
               

               
               394-588, gnl|panTro1|chr9 (86694406-86694513)
               

               
               394-588, gnl|rheMac2|chr14 (83981798-83981905)
               

               
               394-588, gnl|rn3|chr1 (147209881-147209768)
               

               
               394-588, gnl|xenTro1|scaffold_262 (627986-628105)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               394-588, gnl|bosTau2|chr29 (4350981-4351174)
               

               
               394-588, gnl|canFam2|chr21 (16786095-16785978)
               

               
               394-588, gnl|dasNov1|scaffold_487 (163108-162990)
               

               
               394-588, gnl|echTel1|scaffold_305915 (1203-1134)
               

               
               394-588, gnl|hg17|chr11 (85044880-85044987)
               

               
               394-588, gnl|Hg17|chr11 (85044879-85045062)
               

               
               394-588, gnl|loxAfr1|scaffold_23621 (37599-37496)
               

               
               394-588, gnl|mm7|chr7 (86457952-86457837)
               

               
               394-588, gnl|Mm7|chr7 (86457951-86457760)
               

               
               394-588, gnl|panTro1|chr9 (86694406-86694513)
               

               
               394-588, gnl|rheMac2|chr14 (83981798-83981905)
               

               
               394-588, gnl|rn3|chr1 (147209881-147209768)
               

               
               394-588, gnl|xenTro1|scaffold_262 (627986-628105)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               eye (0.341006)
               

               
               pgl (0.118483)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eye (0.341006)
               

               
               pgl (0.118483)

	394-588, gnl\|bosTau2\|chr29 (4350981-4351174)
	394-588, gnl\|canFam2\|chr21 (16786095-16785978)
	394-588, gnl\|dasNov1\|scaffold_487 (163108-162990)
	394-588, gnl\|echTel1\|scaffold_305915 (1203-1134)
	394-588, gnl\|hg17\|chr11 (85044880-85044987)
	394-588, gnl\|Hg17\|chr11 (85044879-85045062)
	394-588, gnl\|loxAfr1\|scaffold_23621 (37599-37496)
	394-588, gnl\|mm7\|chr7 (86457952-86457837)
	394-588, gnl\|Mm7\|chr7 (86457951-86457760)
	394-588, gnl\|panTro1\|chr9 (86694406-86694513)
	394-588, gnl\|rheMac2\|chr14 (83981798-83981905)
	394-588, gnl\|rn3\|chr1 (147209881-147209768)
	394-588, gnl\|xenTro1\|scaffold_262 (627986-628105)