Ss1.1-reye1613b_c14.5
               |  | TGATGGATGGTGGATAACTCTTTTGCATTTAGATCACATGAGAGCAAAGACTAAATATGT
CAGAACCGTGGAGAAGTGGGCTTCCGATTTAAGGCTGACAGGAAGACTGATGTTCCTGGG
TAAAATAATACTGATTTTACTGCAGGGAGACAGAAACAACATCAAGGAGTACCTGATTCT
TCAGAAAACTTCCAAAGTAGATGTGGACTCAAGTGGAAAGAAATGCAAAGAGAAAATGAT
TCGTGTACTGTTTGAAACAAAAGTACAGACAGAACACAAAAGGTTTCTGGCGTTTGAAGT
CAAAGAGTATTCATCGTTGGATGAGTTACAAAAGGAATTTGAAACTGCAGGACTTGAGCA
GCTTTTCTCTGAATTTGTGCTTGGGCTGGTAAAATGACATGAAAGAAGATAGGAATCTTT
TAGTGAAAAAGCAGTGTTCTTGTTTTTGTTTTTTGCATCGGATTTGGGGAGTGGCTGATT
TAAATACTCATAAGGGAACAATTTCAAGAGTTTCTCTGAAGCAAAATGACAGACACCATC
ATCGTTTCAGAACAAAAGCCAATTCTGTTTATGGAATATTAAACAGTAAGGATACCCATA
TATTCTAAGTTTTGCCAGTAAAAGCTAGGTTCAATAGATGGAACGTTATTTGAAAGATAA
ATATAAAAAGATGATGGTAAATGAGCCCTTGTGTTTGTACAGAGGATTTGTTTGGAACTG
TGCAATTTTCTGGCTAATTTTCGTGTAATTAAATGAATTTCAAAAAGAGATTTGTTTTCA
TATTGGCTTTTGTCATGTTTACATTTTTGGTGTTGGATCACGATTTTTCCCCATTCAGCT
TATTGTGTCTAATGTTTTAAGTTGAATGTTAAGAAAAATATAACATTGATTTTTTTTGTG
GAGTTGCATAAATGGTTAGTTTAAATAAAAACTAAA | 
Blue-coloured subsequences are predicted RNA structures by RNAz
               |  | TGATGGATGGTGGATAACTCTTTTGCATTTAGATCACATGAGAGCAAAGACTAAATATGT
CAGAACCGTGGAGAAGTGGGCTTCCGATTTAAGGCTGACAGGAAGACTGATGTTCCTGGG
TAAAATAATACTGATTTTACTGCAGGGAGACAGAAACAACATCAAGGAGTACCTGATTCT
TCAGAAAACTTCCAAAGTAGATGTGGACTCAAGTGGAAAGAAATGCAAAGAGAAAATGAT
TCGTGTACTGTTTGAAACAAAAGTACAGACAGAACACAAAAGGTTTCTGGCGTTTGAAGT
CAAAGAGTATTCATCGTTGGATGAGTTACAAAAGGAATTTGAAACTGCAGGACTTGAGCA
GCTTTTCTCTGAATTTGTGCTTGGGCTGGTAAAATGACATGAAAGAAGATAGGAATCTTT
TAGTGAAAAAGCAGTGTTCTTGTTTTTGTTTTTTGCATCGGATTTGGGGAGTGGCTGATT
TAAATACTCATAAGGGAACAATTTCAAGAGTTTCTCTGAAGCAAAATGACAGACACCATC
ATCGTTTCAGAACAAAAGCCAATTCTGTTTATGGAATATTAAACAGTAAGGATACCCATA
TATTCTAAGTTTTGCCAGTAAAAGCTAGGTTCAATAGATGGAACGTTATTTGAAAGATAA
ATATAAAAAGATGATGGTAAATGAGCCCTTGTGTTTGTACAGAGGATTTGTTTGGAACTG
TGCAATTTTCTGGCTAATTTTCGTGTAATTAAATGAATTTCAAAAAGAGATTTGTTTTCA
TATTGGCTTTTGTCATGTTTACATTTTTGGTGTTGGATCACGATTTTTCCCCATTCAGCT
TATTGTGTCTAATGTTTTAAGTTGAATGTTAAGAAAAATATAACATTGATTTTTTTTGTG
GAGTTGCATAAATGGTTAGTTTAAATAAAAACTAAA | 
               |  | gi|9049987|gb|AAF82579.1| | 
Protein identifier
               |  | gi|9049987|gb|AAF82579.1| | 
               |  | 1-167, gnl|bosTau2|chr3 (37400049-37400215) | 
               |  | 1-167, gnl|canFam2|chr6 (57140066-57139802) | 
               |  | 1-167, gnl|danRer3|chr2 (10231459-10231206) | 
               |  | 1-167, gnl|dasNov1|scaffold_4585 (63470-63734) | 
               |  | 1-167, gnl|galGal2|chr8 (13671192-13670931) | 
               |  | 1-167, gnl|hg17|chr1 (95422015-95422279) | 
               |  | 1-167, gnl|Hg17|chr1 (95422110-95422276) | 
               |  | 1-167, gnl|loxAfr1|scaffold_49836 (834-570) | 
               |  | 1-167, gnl|mm7|chr3 (120930595-120930331) | 
               |  | 1-167, gnl|Mm7|chr3 (120930498-120930332) | 
               |  | 1-167, gnl|monDom2|scaffold_0 (25298121-25297857) | 
               |  | 1-167, gnl|oryCun1|scaffold_178534 (56735-56999) | 
               |  | 1-167, gnl|panTro1|chr1 (94415224-94415488) | 
               |  | 1-167, gnl|rheMac2|chr1 (98275680-98275944) | 
               |  | 1-167, gnl|rn3|chr2 (217704269-217704005) | 
               |  | 1-167, gnl|xenTro1|scaffold_36 (164776-165040) | 
| 
 |  | 
               |  | 281-936, gnl|bosTau2|chr3 (37402405-37403066) | 
               |  | 281-936, gnl|Hg17|chr1 (95424331-95424953) | 
               |  | 281-936, gnl|Mm7|chr3 (120927869-120927249) | 
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
               |  | 1-167, gnl|bosTau2|chr3 (37400049-37400215) | 
               |  | 1-167, gnl|canFam2|chr6 (57140066-57139802) | 
               |  | 1-167, gnl|danRer3|chr2 (10231459-10231206) | 
               |  | 1-167, gnl|dasNov1|scaffold_4585 (63470-63734) | 
               |  | 1-167, gnl|galGal2|chr8 (13671192-13670931) | 
               |  | 1-167, gnl|hg17|chr1 (95422015-95422279) | 
               |  | 1-167, gnl|Hg17|chr1 (95422110-95422276) | 
               |  | 1-167, gnl|loxAfr1|scaffold_49836 (834-570) | 
               |  | 1-167, gnl|mm7|chr3 (120930595-120930331) | 
               |  | 1-167, gnl|Mm7|chr3 (120930498-120930332) | 
               |  | 1-167, gnl|monDom2|scaffold_0 (25298121-25297857) | 
               |  | 1-167, gnl|oryCun1|scaffold_178534 (56735-56999) | 
               |  | 1-167, gnl|panTro1|chr1 (94415224-94415488) | 
               |  | 1-167, gnl|rheMac2|chr1 (98275680-98275944) | 
               |  | 1-167, gnl|rn3|chr2 (217704269-217704005) | 
               |  | 1-167, gnl|xenTro1|scaffold_36 (164776-165040) | 
| 
 |  | 
               |  | 281-936, gnl|bosTau2|chr3 (37402405-37403066) | 
               |  | 281-936, gnl|Hg17|chr1 (95424331-95424953) | 
               |  | 281-936, gnl|Mm7|chr3 (120927869-120927249) | 
               |  | amn (0.417711) | 
               |  | mgp (0.230681) | 
               |  | eye (0.170503) | 
               |  | tbr (0.154178) | 
               |  | isp (0.150376) | 
               |  | bfe (0.149858) | 
               |  | lin (0.145603) | 
               |  | spl (0.143184) | 
               |  | ret (0.128733) | 
               |  | amn (0.417711) | 
               |  | mgp (0.230681) | 
               |  | eye (0.170503) | 
               |  | tbr (0.154178) | 
               |  | isp (0.150376) | 
               |  | bfe (0.149858) | 
               |  | lin (0.145603) | 
               |  | spl (0.143184) | 
               |  | ret (0.128733) |