Non-Coding RNA Search

Ss1.1-reye1613b_e22.5

Sequence:


               
               CTTCTCCCAGCTTCTCTGGCCACTCAGCCCAGAGGCCTCAGCCACTCTACCCCTTATCTC
CTCATCTCTCCAATTGGGAAGGCATCCAGCCGATGTTAACAACCAGGGCAAGTCCCTCCA
GCTGGTCCCCTGTGATGGGGTCGAGTCTCCTTATCAGCCTCTAGGCGGCTGAGATCTCCG
GCAGGGTGTGCGTCAGCCACCCGGCCCCCTGCGGGTCCTTCTGGGGAGGGGACCAGCGGG
CCCCACCTGGGGGAAGCGTGCAGCCTGCACTGGTCAGCAGCTCACTGGGCCAGTGGAAAG
TTACTGGGTGGAGTCAGGGAGGTTCAGAGTGGATACCTGGACCTTTCCTTGCCTCTCCCT
CCAGAGCTGCCTCTCTCCTCATATGCCCATGGTTCTGTTTGCCCCTGGGGAGGGTAACTA
GTTTGTCACTTATGTCTTCCTGATCCCGCCCTTCCCCCCGCCCCCACCCCAAGGCCCTTC
CTATTTCTAGCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTCTCCCAGCTTCTCTGGCCACTCAGCCCAGAGGCCTCAGCCACTCTACCCCTTATCTC
CTCATCTCTCCAATTGGGAAGGCATCCAGCCGATGTTAACAACCAGGGCAAGTCCCTCCA
GCTGGTCCCCTGTGATGGGGTCGAGTCTCCTTATCAGCCTCTAGGCGGCTGAGATCTCCG
GCAGGGTGTGCGTCAGCCACCCGGCCCCCTGCGGGTCCTTCTGGGGAGGGGACCAGCGGG
CCCCACCTGGGGGAAGCGTGCAGCCTGCACTGGTCAGCAGCTCACTGGGCCAGTGGAAAG
TTACTGGGTGGAGTCAGGGAGGTTCAGAGTGGATACCTGGACCTTTCCTTGCCTCTCCCT
CCAGAGCTGCCTCTCTCCTCATATGCCCATGGTTCTGTTTGCCCCTGGGGAGGGTAACTA
GTTTGTCACTTATGTCTTCCTGATCCCGCCCTTCCCCCCGCCCCCACCCCAAGGCCCTTC
CTATTTCTAGCT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               356-472, - strand, RNAz p=0.932923

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               356-472, - strand, RNAz p=0.932923

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-472, gnl|bosTau2|chr5 (23316336-23316809)
               

               
               1-472, gnl|Hg17|chr12 (48549445-48548976)
               

               
               1-472, gnl|Mm7|chr15 (99484377-99483957)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-472, gnl|bosTau2|chr5 (23316336-23316809)
               

               
               1-472, gnl|Hg17|chr12 (48549445-48548976)
               

               
               1-472, gnl|Mm7|chr15 (99484377-99483957)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               fce (0.271592)
               

               
               fbs (0.175346)
               

               
               eye (0.170503)
               

               
               hyp (0.142837)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.271592)
               

               
               fbs (0.175346)
               

               
               eye (0.170503)
               

               
               hyp (0.142837)

	1-472, gnl\|bosTau2\|chr5 (23316336-23316809)
	1-472, gnl\|Hg17\|chr12 (48549445-48548976)
	1-472, gnl\|Mm7\|chr15 (99484377-99483957)