Non-Coding RNA Search

Ss1.1-reye1614b_b23.5

Sequence:


               
               CCGCCCGGCTCCCTGGCGAGGCCGCAGGCACCCACGAGGGCACGGGCGGGGGGCTTCTGG
CGGCTGGTCTGGCAGGTGTAGGGCGCCGGTAGGAGCTGGGCGCGCACGGCTACCGAGCGT
GGAGGAGACACTGCCCTGCGGCAATGGGTGCCAGGGGCGCTCCTTCACGCCGGAGGCAGG
CGGGGCGGCGGCCGCGGTATCTGCCCACCGGGAGCTTTCCCTTTCTCCTCCTCCTGCTGC
TTCTCTGCATCCAGCTCGGAGGAGGACAGAAGAAAAAGGAGAATCTCTTAACCGAAAAAG
TAGAACAGCTGATGGAATGGAGTTCTAGGCGCTCAATCTTCCGAATGAATGGTGACAAAT
TCCGAAAGTTTATCAAGACACCACCTCGAAACTATTCTATGATTGTTATGTTCACTGCTC
TTCAACCTCAGCGGCAGTGTTCTGTGTGCAGGCAAGCTAATGAAGAATATCAAATACTGG
CTAACTCCTGGCGCTATTCATCTGCTTTTTGCAACAAACTCTTCTTCAGTATGGTGGACT
ATGATGAGGGAACAGACGTTTTTCAGCAGCTCAACATGAACTCTGCTCCTACATTCATGC
ATTTTCCTCCAAAAGGCAGACCCAAGAGAGCTGATACTTTTGACCTTCAAAGAATTGGAT
TTGCAGCTGAACAACTCGCAAAGTGGATTGCTGACAGAACGGATGTTCATATTCGAGTCT
TCAGACCACCCAACTACTCTGGCACCATTGCTTTGGCCTTGTTGGTGTCACTTGTTGGTG
GTTTGCTCTATTTGAGAAGGAACAACTTGGAGTTCATCTATAACAAGACTGGTTGGGCCA
TGGTATCTTTGTGTATAGTCTTTGCTATGACTTCTGGCCAGATGTGGAATCATATCCGTG
GACCTCCATATGCTCATAAAAACCCACACAATGGACAAGTGAGCTACATTCATGGAAGCA
GCCAGGCTCAATTCGTGGCAGAGTCACACATTATTCTGGTACTAAACGCTGCTATCACCA
TGGGGATGGTTCTTCTAAATGAAGCGGCAACATCCAAAGGAGATGTTGGAAAAAGACGAA
TCATTTGTCTAGTGGGACTAGGCCTGGTGGTCTTCTTCTTCAGTTTTCTACTTTCAATAT
TTCGTTCCAAGTACCATGGCTATCCTTACAGCTTTTTAATTAAATGAAGCCAAGTGGGAT
TTGCATAAAGTGAATGTTTACCGTGAAGATAAAGTGTTCCTGACATACTAGTTTGAATTC
CTGAGTTCATTTCCTTGCCGATTGTGATAATCCAGCTTAGTCTTGTATCATTTTTTTAAA
CGTGAGTTTTCCTAGTAAACTTAATTTATAGAAGTGGATGGTTACATTTAATATGGAAAT
AACGAACTGTTGAAGTATTTCTCAAGCATATTATATTCAGTGTGTGCTGTAAAATTGAAA
TAAATGATAATGTAATCATGAATTCATGTTTTAAAACTGTTCACTCACTGGTAAAGAAAA
CTCCAGTGTTAGTAAAGGAAAACTGTGAAATGTATCTTCAACAACTTGGGGTTGTATAGA
GGTGAGGTGTATGCATGAAAATATGTCATGTACTGAAAAATTATACTTAACTGCAGCTTC
AGTATAAATGAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCGCCCGGCTCCCTGGCGAGGCCGCAGGCACCCACGAGGGCACGGGCGGGGGGCTTCTGG
CGGCTGGTCTGGCAGGTGTAGGGCGCCGGTAGGAGCTGGGCGCGCACGGCTACCGAGCGT
GGAGGAGACACTGCCCTGCGGCAATGGGTGCCAGGGGCGCTCCTTCACGCCGGAGGCAGG
CGGGGCGGCGGCCGCGGTATCTGCCCACCGGGAGCTTTCCCTTTCTCCTCCTCCTGCTGC
TTCTCTGCATCCAGCTCGGAGGAGGACAGAAGAAAAAGGAGAATCTCTTAACCGAAAAAG
TAGAACAGCTGATGGAATGGAGTTCTAGGCGCTCAATCTTCCGAATGAATGGTGACAAAT
TCCGAAAGTTTATCAAGACACCACCTCGAAACTATTCTATGATTGTTATGTTCACTGCTC
TTCAACCTCAGCGGCAGTGTTCTGTGTGCAGGCAAGCTAATGAAGAATATCAAATACTGG
CTAACTCCTGGCGCTATTCATCTGCTTTTTGCAACAAACTCTTCTTCAGTATGGTGGACT
ATGATGAGGGAACAGACGTTTTTCAGCAGCTCAACATGAACTCTGCTCCTACATTCATGC
ATTTTCCTCCAAAAGGCAGACCCAAGAGAGCTGATACTTTTGACCTTCAAAGAATTGGAT
TTGCAGCTGAACAACTCGCAAAGTGGATTGCTGACAGAACGGATGTTCATATTCGAGTCT
TCAGACCACCCAACTACTCTGGCACCATTGCTTTGGCCTTGTTGGTGTCACTTGTTGGTG
GTTTGCTCTATTTGAGAAGGAACAACTTGGAGTTCATCTATAACAAGACTGGTTGGGCCA
TGGTATCTTTGTGTATAGTCTTTGCTATGACTTCTGGCCAGATGTGGAATCATATCCGTG
GACCTCCATATGCTCATAAAAACCCACACAATGGACAAGTGAGCTACATTCATGGAAGCA
GCCAGGCTCAATTCGTGGCAGAGTCACACATTATTCTGGTACTAAACGCTGCTATCACCA
TGGGGATGGTTCTTCTAAATGAAGCGGCAACATCCAAAGGAGATGTTGGAAAAAGACGAA
TCATTTGTCTAGTGGGACTAGGCCTGGTGGTCTTCTTCTTCAGTTTTCTACTTTCAATAT
TTCGTTCCAAGTACCATGGCTATCCTTACAGCTTTTTAATTAAATGAAGCCAAGTGGGAT
TTGCATAAAGTGAATGTTTACCGTGAAGATAAAGTGTTCCTGACATACTAGTTTGAATTC
CTGAGTTCATTTCCTTGCCGATTGTGATAATCCAGCTTAGTCTTGTATCATTTTTTTAAA
CGTGAGTTTTCCTAGTAAACTTAATTTATAGAAGTGGATGGTTACATTTAATATGGAAAT
AACGAACTGTTGAAGTATTTCTCAAGCATATTATATTCAGTGTGTGCTGTAAAATTGAAA
TAAATGATAATGTAATCATGAATTCATGTTTTAAAACTGTTCACTCACTGGTAAAGAAAA
CTCCAGTGTTAGTAAAGGAAAACTGTGAAATGTATCTTCAACAACTTGGGGTTGTATAGA
GGTGAGGTGTATGCATGAAAATATGTCATGTACTGAAAAATTATACTTAACTGCAGCTTC
AGTATAAATGAT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               TUSC3_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               TUSC3_HUMAN

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1166-1632, gnl|bosTau2|chr4 (33587724-33588196)
               

               
               1166-1632, gnl|Hg17|chr8 (15666077-15666534)
               

               
               1166-1632, gnl|Mm7|chr8 (37955439-37955900)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1166-1632, gnl|bosTau2|chr4 (33587724-33588196)
               

               
               1166-1632, gnl|Hg17|chr8 (15666077-15666534)
               

               
               1166-1632, gnl|Mm7|chr8 (37955439-37955900)

Expressed library(ies): 18 entry(ies)

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Expressed library(ies): 18 entry(ies)

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               fco (0.628832)
               

               
               fcc (0.39557)
               

               
               sug (0.381874)
               

               
               tra (0.369276)
               

               
               eye (0.341006)
               

               
               mgp (0.230681)
               

               
               ecc (0.23007)
               

               
               mcp (0.170648)
               

               
               cut (0.169924)
               

               
               fhi (0.169578)
               

               
               liv (0.146284)
               

               
               hyp (0.142837)
               

               
               pty (0.142714)
               

               
               lyg (0.133103)
               

               
               ret (0.128733)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)
               

               
               med (0.116252)

Expressed library(ies): 18 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fco (0.628832)
               

               
               fcc (0.39557)
               

               
               sug (0.381874)
               

               
               tra (0.369276)
               

               
               eye (0.341006)
               

               
               mgp (0.230681)
               

               
               ecc (0.23007)
               

               
               mcp (0.170648)
               

               
               cut (0.169924)
               

               
               fhi (0.169578)
               

               
               liv (0.146284)
               

               
               hyp (0.142837)
               

               
               pty (0.142714)
               

               
               lyg (0.133103)
               

               
               ret (0.128733)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)
               

               
               med (0.116252)

	1166-1632, gnl\|bosTau2\|chr4 (33587724-33588196)
	1166-1632, gnl\|Hg17\|chr8 (15666077-15666534)
	1166-1632, gnl\|Mm7\|chr8 (37955439-37955900)

	fco (0.628832)
	fcc (0.39557)
	sug (0.381874)
	tra (0.369276)
	eye (0.341006)
	mgp (0.230681)
	ecc (0.23007)
	mcp (0.170648)
	cut (0.169924)
	fhi (0.169578)
	liv (0.146284)
	hyp (0.142837)
	pty (0.142714)
	lyg (0.133103)
	ret (0.128733)
	pgl (0.118483)
	ebs (0.118301)
	med (0.116252)