Ss1.1-reye1614b_j11.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTCAGCACATGATTTTATAAGACGTGGGTTTGAGATCAGGACAGAAGCACCAACAGCCCA GGTCCCTGGAGCGCAGGATGCATGTGAGGCAAGGCCGCCTCCGGGGACCAACCCCGGGTC CCTCAGGCCCTGCCAGGCCGCCTTCCGTGCAGGTCTTCTGCGCCGACCGCGGCCCAGCTC TTCTCCGCCAGGCACGCAAGGCTCCGCTTCGGGGGCCCAGCCTCAGCAGGCACCAGGCTT GGAGACCAGCTGAGGTCTGGGCACGCCGAGGAGGTCACACAGGCGGTTCCGCTGGGCTCT CACGACCGGGAGCTCGGCGTCCCAGGCTGTGTCGCTGAGCACGGCCATGACCTCGTCCAG GACGTCGGCGGCCACCACCTCGTAGGTCAGCACCATCTCGTACACCTGGCTGGCCGTGCT CTTCCGGATCACGGGGAACGGGTGACAGAGCAGGAGGCAGAGCTGCAGGAGGACCCGCCT CCTCACGTCGCCGGGGAACTGCGCCAGCCCACAGAACACTGCGACGCTGGCCCGCAGTTT CTGGACGTCTTTGGACTTCCGGGTCTCTTCCTTACAAAGCGCGAGCAGCTTCACACAGAA GGGGTGGTCCTCCTCGGCCGCGAAGACATCGAAGCAGCCGTGGGCCAGCATCTGGTCCAG CGTCCTCAGCAGCGGCACGGACACCCGGTCGTTGAGCAGGTTGTCCTCGAAGACCCGCAG GAGGGCGCCCGCCACGTCCTCCAGGGCCCGCGGGTCGCCCCGCACCCGCTCCATGTACTC CAAGAGGCCCTGCGTCGAGTACCTGACCGTGGACTCGGTCAGGCCGCCCACAGACACGGC CAGCCCCAGCAGCACGTGGTAGCGGTAGGCAGGCAGCCCCAGGAGCTGGGCCACACGCGG GAAGGCCTGCGACGGTGCAGCCCAGTTCACGGAGGCCACGGTGGACCTGGGGAAGAGCCT CTCCAGCTCCTGCCGGTGGGGCACATGGGGGATGGCGGGGCCGTCAAAGTGGAGCAGAGC CAGGAACACGCGGGCCGCGTGCGCACGGAACCGGTCAATCTTCTCGCTCGCCTGCTGGGC TAAGCAGCACATGACCCGCTCGCAGACGGGGGCCTCGATCAGCTCTGGCTCGCCCCTCCC CAGCAGCAGAGTCAGGTCCCTCAGGCCAGTCACGGCGGCCTCACGGACCCACGCCCCCAC GTCCCCGCGGCTGTCGGTGGTGTAGTCGCTCAGACAGTCCAGCATTGTGCAGTAAATCTG GGGCACGTTCTCTCGGCACACGACCTCGTCGGGGGCCCCTTCCGCCCTCACGCCGACGGT CTGGCAGATCCTGGTGATGGCCTTCAGGGCGTCCCGCCTGGACTCCGCGAAGCCCGCATC CTCCGGAGAAATGCGTGTCACGGCCCGCAAGCCGTCCAGAACCCGCTGGAGCTGGCCCTT CAGGAAGAAGCGGGGCAGGGCGCCCAAGGCCAGCGCGAAGCCACAGCGAGTCATCTCCTC GGGGCTCTGAAGCTGGGCCAGGTACCGCGATATCAGCTCCTCCTGCACGGCGGGGTCGGC CTCCCCGGGCTCCCGGGTGTAGTACGCGTCGCAAAGAGCCGCCAGCGCCGACACGGCCGC GTCCTTTATCTGCTGCCGGGAGGGACTGGAAACGAGGGGCAGGCTCCTCAGCGTGTCGTC CACCAGCTGCTGCCAAGCGCCGACCACGGCGTCCCCTCTGAAGGGCATCTTGGAAAGGGA CAGATTTTCTATCAGGATGCACACTGCTCTTCTCATGAGCTCTCCTCCCAGGCCCCTGTA CAGCTGACGGTCGTAAAGCTGCTGGTGGATCTGCTTCAGGCCCTGCACAACCTTCTCGTC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTCAGCACATGATTTTATAAGACGTGGGTTTGAGATCAGGACAGAAGCACCAACAGCCCA GGTCCCTGGAGCGCAGGATGCATGTGAGGCAAGGCCGCCTCCGGGGACCAACCCCGGGTC CCTCAGGCCCTGCCAGGCCGCCTTCCGTGCAGGTCTTCTGCGCCGACCGCGGCCCAGCTC TTCTCCGCCAGGCACGCAAGGCTCCGCTTCGGGGGCCCAGCCTCAGCAGGCACCAGGCTT GGAGACCAGCTGAGGTCTGGGCACGCCGAGGAGGTCACACAGGCGGTTCCGCTGGGCTCT CACGACCGGGAGCTCGGCGTCCCAGGCTGTGTCGCTGAGCACGGCCATGACCTCGTCCAG GACGTCGGCGGCCACCACCTCGTAGGTCAGCACCATCTCGTACACCTGGCTGGCCGTGCT CTTCCGGATCACGGGGAACGGGTGACAGAGCAGGAGGCAGAGCTGCAGGAGGACCCGCCT CCTCACGTCGCCGGGGAACTGCGCCAGCCCACAGAACACTGCGACGCTGGCCCGCAGTTT CTGGACGTCTTTGGACTTCCGGGTCTCTTCCTTACAAAGCGCGAGCAGCTTCACACAGAA GGGGTGGTCCTCCTCGGCCGCGAAGACATCGAAGCAGCCGTGGGCCAGCATCTGGTCCAG CGTCCTCAGCAGCGGCACGGACACCCGGTCGTTGAGCAGGTTGTCCTCGAAGACCCGCAG GAGGGCGCCCGCCACGTCCTCCAGGGCCCGCGGGTCGCCCCGCACCCGCTCCATGTACTC CAAGAGGCCCTGCGTCGAGTACCTGACCGTGGACTCGGTCAGGCCGCCCACAGACACGGC CAGCCCCAGCAGCACGTGGTAGCGGTAGGCAGGCAGCCCCAGGAGCTGGGCCACACGCGG GAAGGCCTGCGACGGTGCAGCCCAGTTCACGGAGGCCACGGTGGACCTGGGGAAGAGCCT CTCCAGCTCCTGCCGGTGGGGCACATGGGGGATGGCGGGGCCGTCAAAGTGGAGCAGAGC CAGGAACACGCGGGCCGCGTGCGCACGGAACCGGTCAATCTTCTCGCTCGCCTGCTGGGC TAAGCAGCACATGACCCGCTCGCAGACGGGGGCCTCGATCAGCTCTGGCTCGCCCCTCCC CAGCAGCAGAGTCAGGTCCCTCAGGCCAGTCACGGCGGCCTCACGGACCCACGCCCCCAC GTCCCCGCGGCTGTCGGTGGTGTAGTCGCTCAGACAGTCCAGCATTGTGCAGTAAATCTG GGGCACGTTCTCTCGGCACACGACCTCGTCGGGGGCCCCTTCCGCCCTCACGCCGACGGT CTGGCAGATCCTGGTGATGGCCTTCAGGGCGTCCCGCCTGGACTCCGCGAAGCCCGCATC CTCCGGAGAAATGCGTGTCACGGCCCGCAAGCCGTCCAGAACCCGCTGGAGCTGGCCCTT CAGGAAGAAGCGGGGCAGGGCGCCCAAGGCCAGCGCGAAGCCACAGCGAGTCATCTCCTC GGGGCTCTGAAGCTGGGCCAGGTACCGCGATATCAGCTCCTCCTGCACGGCGGGGTCGGC CTCCCCGGGCTCCCGGGTGTAGTACGCGTCGCAAAGAGCCGCCAGCGCCGACACGGCCGC GTCCTTTATCTGCTGCCGGGAGGGACTGGAAACGAGGGGCAGGCTCCTCAGCGTGTCGTC CACCAGCTGCTGCCAAGCGCCGACCACGGCGTCCCCTCTGAAGGGCATCTTGGAAAGGGA CAGATTTTCTATCAGGATGCACACTGCTCTTCTCATGAGCTCTCCTCCCAGGCCCCTGTA CAGCTGACGGTCGTAAAGCTGCTGGTGGATCTGCTTCAGGCCCTGCACAACCTTCTCGTC |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 59 entry(ies) | More info |
| Aligned organism(s): 59 entry(ies) | Help | Less info |
| 1-239, gnl|bosTau2|chr19 (43935188-43934952) | |
| 1-239, gnl|canFam2|chrUn (12096755-12097056) | |
| 1-239, gnl|hg17|chr17 (78493583-78493948) | |
| 1-239, gnl|Hg17|chr17 (78493867-78493612) | |
| 1-239, gnl|mm7|chr11 (121725943-121726250) | |
| 1-239, gnl|panTro1|chr19 (82302638-82303003) | |
| 1-239, gnl|rheMac2|chr16 (78424853-78425217) | |
| 1-239, gnl|rn3|chrUn (6009739-6009404) | |
| 322-451, gnl|bosTau2|chr19 (43928961-43928832) | |
| 322-451, gnl|Hg17|chr17 (78490642-78490472) | |
| 322-451, gnl|Mm7|chr11 (121719136-121719022) | |
| 685-808, gnl|bosTau2|chr19 (43923155-43923032) | |
| 685-808, gnl|canFam2|chrUn (12088709-12088817) | |
| 685-808, gnl|danRer3|chrUn (601708-601813) | |
| 685-808, gnl|hg17|chr17 (78481672-78481780) | |
| 685-808, gnl|Hg17|chr17 (78481809-78481686) | |
| 685-808, gnl|mm7|chr11 (121712652-121712753) | |
| 685-808, gnl|Mm7|chr11 (121712782-121712659) | |
| 685-808, gnl|monDom2|scaffold_88 (1552632-1552740) | |
| 685-808, gnl|oryCun1|scaffold_101120 (5280-5178) | |
| 685-808, gnl|panTro1|chr19 (82290581-82290689) | |
| 685-808, gnl|rheMac2|chr16 (78413260-78413368) | |
| 685-808, gnl|rn3|chrUn (6020532-6020431) | |
| 685-808, gnl|tetNig1|chr3 (10792371-10792266) | |
| 945-1105, gnl|bosTau2|chr19 (43921670-43921510) | |
| 945-1105, gnl|canFam2|chrUn (12086548-12086739) | |
| 945-1105, gnl|danRer3|chrUn (593292-593472) | |
| 945-1105, gnl|dasNov1|scaffold_124151 (4316-4139) | |
| 945-1105, gnl|echTel1|scaffold_323345 (3133-2955) | |
| 945-1105, gnl|fr1|chrUn (127481496-127481312) | |
| 945-1105, gnl|hg17|chr17 (78480252-78480443) | |
| 945-1105, gnl|Hg17|chr17 (78480438-78480278) | |
| 945-1105, gnl|loxAfr1|scaffold_69385 (12947-13118) | |
| 945-1105, gnl|mm7|chr11 (121712018-121712198) | |
| 945-1105, gnl|Mm7|chr11 (121712193-121712033) | |
| 945-1105, gnl|monDom2|scaffold_88 (1550645-1550824) | |
| 945-1105, gnl|oryCun1|scaffold_101120 (6296-6121) | |
| 945-1105, gnl|panTro1|chr19 (82288779-82288970) | |
| 945-1105, gnl|rheMac2|chr16 (78411888-78412079) | |
| 945-1105, gnl|rn3|chrUn (6021155-6020975) | |
| 945-1105, gnl|tetNig1|chr3 (10793678-10793518) | |
| 945-1105, gnl|xenTro1|scaffold_1373 (140297-140475) | |
| 1189-1332, gnl|bosTau2|chr19 (43920017-43919874) | |
| 1189-1332, gnl|Hg17|chr17 (78478489-78478349) | |
| 1189-1332, gnl|Mm7|chr11 (121706438-121706295) | |
| 1421-1542, gnl|bosTau2|chr19 (43917929-43917808) | |
| 1421-1542, gnl|canFam2|chrUn (12083369-12083507) | |
| 1421-1542, gnl|danRer3|chrUn (585225-585381) | |
| 1421-1542, gnl|dasNov1|scaffold_50347 (1715-1867) | |
| 1421-1542, gnl|hg17|chr17 (78476102-78476256) | |
| 1421-1542, gnl|Hg17|chr17 (78476224-78476103) | |
| 1421-1542, gnl|loxAfr1|scaffold_60541 (8271-8417) | |
| 1421-1542, gnl|mm7|chr11 (121703303-121703463) | |
| 1421-1542, gnl|Mm7|chr11 (121703425-121703304) | |
| 1421-1542, gnl|oryCun1|scaffold_101120 (10014-9866) | |
| 1421-1542, gnl|panTro1|chr19 (82284639-82284793) | |
| 1421-1542, gnl|rheMac2|chr16 (78408060-78408214) | |
| 1421-1542, gnl|rn3|chrUn (6030233-6030103) | |
| 1421-1542, gnl|xenTro1|scaffold_1373 (133218-133371) |
| Aligned organism(s): 59 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-239, gnl|bosTau2|chr19 (43935188-43934952) | |
| 1-239, gnl|canFam2|chrUn (12096755-12097056) | |
| 1-239, gnl|hg17|chr17 (78493583-78493948) | |
| 1-239, gnl|Hg17|chr17 (78493867-78493612) | |
| 1-239, gnl|mm7|chr11 (121725943-121726250) | |
| 1-239, gnl|panTro1|chr19 (82302638-82303003) | |
| 1-239, gnl|rheMac2|chr16 (78424853-78425217) | |
| 1-239, gnl|rn3|chrUn (6009739-6009404) | |
| 322-451, gnl|bosTau2|chr19 (43928961-43928832) | |
| 322-451, gnl|Hg17|chr17 (78490642-78490472) | |
| 322-451, gnl|Mm7|chr11 (121719136-121719022) | |
| 685-808, gnl|bosTau2|chr19 (43923155-43923032) | |
| 685-808, gnl|canFam2|chrUn (12088709-12088817) | |
| 685-808, gnl|danRer3|chrUn (601708-601813) | |
| 685-808, gnl|hg17|chr17 (78481672-78481780) | |
| 685-808, gnl|Hg17|chr17 (78481809-78481686) | |
| 685-808, gnl|mm7|chr11 (121712652-121712753) | |
| 685-808, gnl|Mm7|chr11 (121712782-121712659) | |
| 685-808, gnl|monDom2|scaffold_88 (1552632-1552740) | |
| 685-808, gnl|oryCun1|scaffold_101120 (5280-5178) | |
| 685-808, gnl|panTro1|chr19 (82290581-82290689) | |
| 685-808, gnl|rheMac2|chr16 (78413260-78413368) | |
| 685-808, gnl|rn3|chrUn (6020532-6020431) | |
| 685-808, gnl|tetNig1|chr3 (10792371-10792266) | |
| 945-1105, gnl|bosTau2|chr19 (43921670-43921510) | |
| 945-1105, gnl|canFam2|chrUn (12086548-12086739) | |
| 945-1105, gnl|danRer3|chrUn (593292-593472) | |
| 945-1105, gnl|dasNov1|scaffold_124151 (4316-4139) | |
| 945-1105, gnl|echTel1|scaffold_323345 (3133-2955) | |
| 945-1105, gnl|fr1|chrUn (127481496-127481312) | |
| 945-1105, gnl|hg17|chr17 (78480252-78480443) | |
| 945-1105, gnl|Hg17|chr17 (78480438-78480278) | |
| 945-1105, gnl|loxAfr1|scaffold_69385 (12947-13118) | |
| 945-1105, gnl|mm7|chr11 (121712018-121712198) | |
| 945-1105, gnl|Mm7|chr11 (121712193-121712033) | |
| 945-1105, gnl|monDom2|scaffold_88 (1550645-1550824) | |
| 945-1105, gnl|oryCun1|scaffold_101120 (6296-6121) | |
| 945-1105, gnl|panTro1|chr19 (82288779-82288970) | |
| 945-1105, gnl|rheMac2|chr16 (78411888-78412079) | |
| 945-1105, gnl|rn3|chrUn (6021155-6020975) | |
| 945-1105, gnl|tetNig1|chr3 (10793678-10793518) | |
| 945-1105, gnl|xenTro1|scaffold_1373 (140297-140475) | |
| 1189-1332, gnl|bosTau2|chr19 (43920017-43919874) | |
| 1189-1332, gnl|Hg17|chr17 (78478489-78478349) | |
| 1189-1332, gnl|Mm7|chr11 (121706438-121706295) | |
| 1421-1542, gnl|bosTau2|chr19 (43917929-43917808) | |
| 1421-1542, gnl|canFam2|chrUn (12083369-12083507) | |
| 1421-1542, gnl|danRer3|chrUn (585225-585381) | |
| 1421-1542, gnl|dasNov1|scaffold_50347 (1715-1867) | |
| 1421-1542, gnl|hg17|chr17 (78476102-78476256) | |
| 1421-1542, gnl|Hg17|chr17 (78476224-78476103) | |
| 1421-1542, gnl|loxAfr1|scaffold_60541 (8271-8417) | |
| 1421-1542, gnl|mm7|chr11 (121703303-121703463) | |
| 1421-1542, gnl|Mm7|chr11 (121703425-121703304) | |
| 1421-1542, gnl|oryCun1|scaffold_101120 (10014-9866) | |
| 1421-1542, gnl|panTro1|chr19 (82284639-82284793) | |
| 1421-1542, gnl|rheMac2|chr16 (78408060-78408214) | |
| 1421-1542, gnl|rn3|chrUn (6030233-6030103) | |
| 1421-1542, gnl|xenTro1|scaffold_1373 (133218-133371) |
| Expressed library(ies): 6 entry(ies) | More info |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
| col (0.585023) | |
| fbs (0.350693) | |
| mas (0.210305) | |
| eye (0.170503) | |
| hyp (0.142837) | |
| cst (0.140036) |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| col (0.585023) | |
| fbs (0.350693) | |
| mas (0.210305) | |
| eye (0.170503) | |
| hyp (0.142837) | |
| cst (0.140036) |