Non-Coding RNA Search

Ss1.1-reye1617b_e1.5

Sequence:


               
               CTTTGCTGTACAGCAGAAACTGACAGAACAGTGTAAATCAACTATAATAAACATGTAAAT
AAAAGTGGACGGGGGTGGGGAGCTGATCATCTAACTGCATCTGCTTTTGAGAATAAATAA
GTTTATCTTAAATCTTCAGTCATGTTTCCCCTCAGATTGGAGAACAGGGGGATAAATTAA
ACTTCATGGAACCTACAAACAGCATTTCATAATATCTTGATTTTCCGCATTGCAAGATTG
TCAATCCCTGATAGAGGGTTTTGAGACCCACATTAATTTTAAGCCTGAATAATAACACTA
GAACCATTTACCTTATGTACCTGCAAAAGATCCTGAGGTCTGTATAACCGCAGAATCTGG
ATATACAAAATACAGTTTAATGTTATAGTCTGTCTTCTAATGTGAAATCTTTTGAGAAAG
GGTAGCAAAAACATCATTTGCATTCACTTGAACTCTTAATACTTATTCCCCAAGCACAGT
GCCTAAAACAGCTTGTGCAGTCATGAAATTAAGTAACAATATTATATTGAGCTAAGGGGA
AAAAGATTTGGGAATAAATTGTCAAGGCAAGTTCTATTAAAAGCTCCCTTTAATAGACAT
CGGGGATTGCTTGTTCAGATAACCTTAGCAGCTTTGGGTTGCACATGCAAGAGATAGTAC
TTGACAGGTATTATTGATTTTTTTTATAACTTCATAAAGTACTGTCTTATGCCATTGGAG
AGCTCTTAGGTATATTTATATATAAACAGAATGGATGGGTTTTTTCCTTGGAATAATAAA
TGACTTCTAGCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTTGCTGTACAGCAGAAACTGACAGAACAGTGTAAATCAACTATAATAAACATGTAAAT
AAAAGTGGACGGGGGTGGGGAGCTGATCATCTAACTGCATCTGCTTTTGAGAATAAATAA
GTTTATCTTAAATCTTCAGTCATGTTTCCCCTCAGATTGGAGAACAGGGGGATAAATTAA
ACTTCATGGAACCTACAAACAGCATTTCATAATATCTTGATTTTCCGCATTGCAAGATTG
TCAATCCCTGATAGAGGGTTTTGAGACCCACATTAATTTTAAGCCTGAATAATAACACTA
GAACCATTTACCTTATGTACCTGCAAAAGATCCTGAGGTCTGTATAACCGCAGAATCTGG
ATATACAAAATACAGTTTAATGTTATAGTCTGTCTTCTAATGTGAAATCTTTTGAGAAAG
GGTAGCAAAAACATCATTTGCATTCACTTGAACTCTTAATACTTATTCCCCAAGCACAGT
GCCTAAAACAGCTTGTGCAGTCATGAAATTAAGTAACAATATTATATTGAGCTAAGGGGA
AAAAGATTTGGGAATAAATTGTCAAGGCAAGTTCTATTAAAAGCTCCCTTTAATAGACAT
CGGGGATTGCTTGTTCAGATAACCTTAGCAGCTTTGGGTTGCACATGCAAGAGATAGTAC
TTGACAGGTATTATTGATTTTTTTTATAACTTCATAAAGTACTGTCTTATGCCATTGGAG
AGCTCTTAGGTATATTTATATATAAACAGAATGGATGGGTTTTTTCCTTGGAATAATAAA
TGACTTCTAGCC

Aligned organism(s): 4 entry(ies)

More info

Aligned organism(s): 4 entry(ies)

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               74-242, gnl|bosTau2|chr25 (11096492-11096323)
               

               
               74-242, gnl|Hg17|chr16 (12662849-12662687)
               


               
               354-791, gnl|bosTau2|chr25 (11094901-11094457)
               

               
               354-791, gnl|Hg17|chr16 (12662577-12661810)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               74-242, gnl|bosTau2|chr25 (11096492-11096323)
               

               
               74-242, gnl|Hg17|chr16 (12662849-12662687)
               


               
               354-791, gnl|bosTau2|chr25 (11094901-11094457)
               

               
               354-791, gnl|Hg17|chr16 (12662577-12661810)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               duo (0.172801)
               

               
               eye (0.170503)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               duo (0.172801)
               

               
               eye (0.170503)

	74-242, gnl\|bosTau2\|chr25 (11096492-11096323)
	74-242, gnl\|Hg17\|chr16 (12662849-12662687)

	354-791, gnl\|bosTau2\|chr25 (11094901-11094457)
	354-791, gnl\|Hg17\|chr16 (12662577-12661810)