Non-Coding RNA Search

Ss1.1-reye1617b_m19.5

Sequence:


               
               GCTTTTATTATTTCCAGGGGGGTTTCACTGAGCATTGGGCATGATGTGAACAGAAAGAGA
CCCACAAGCCTCTTTGATTTTTTTTTTCATGGAACTTTGCTGTCTTTGCACAGCTTTTAT
GAACTGTACACATATTTTGTACACATGTATGGATATTTTATACCAAGGTTATTGTGAATG
ATATAAAGGGCTGACTAGATTTCCTTCTCTCTTTTTTGCAATGATGTTTAAACTTTAAAA
AGTAGCTGTTTAATTGAATAACTTATAAAGAAATACTTATTTTGTATTTTTACCATGTAC
AGATTTTTATATATGTATATATGTATCAAATGAACAAATGCCAAATAAAAAGTAGAATGG
AAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTTTTATTATTTCCAGGGGGGTTTCACTGAGCATTGGGCATGATGTGAACAGAAAGAGA
CCCACAAGCCTCTTTGATTTTTTTTTTCATGGAACTTTGCTGTCTTTGCACAGCTTTTAT
GAACTGTACACATATTTTGTACACATGTATGGATATTTTATACCAAGGTTATTGTGAATG
ATATAAAGGGCTGACTAGATTTCCTTCTCTCTTTTTTGCAATGATGTTTAAACTTTAAAA
AGTAGCTGTTTAATTGAATAACTTATAAAGAAATACTTATTTTGTATTTTTACCATGTAC
AGATTTTTATATATGTATATATGTATCAAATGAACAAATGCCAAATAAAAAGTAGAATGG
AAAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               41-159, + strand, RNAz p=0.916426

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               41-159, + strand, RNAz p=0.916426

Aligned organism(s): 19 entry(ies)

More info

Aligned organism(s): 19 entry(ies)

Help | Less info


               
               2-366, gnl|bosTau2|chr29 (17426306-17426668)
               

               
               2-366, gnl|canFam2|chr21 (45398294-45398607)
               

               
               2-366, gnl|danRer3|chr7 (7394549-7394840)
               

               
               2-366, gnl|dasNov1|scaffold_7061 (29311-29612)
               

               
               2-366, gnl|echTel1|scaffold_316374 (105552-105859)
               

               
               2-366, gnl|fr1|chrUn (69041113-69040870)
               

               
               2-366, gnl|galGal2|chr5 (1417099-1416800)
               

               
               2-366, gnl|hg17|chr11 (20133111-20133424)
               

               
               2-366, gnl|Hg17|chr11 (20133529-20133141)
               

               
               2-366, gnl|loxAfr1|scaffold_6018 (12482-12173)
               

               
               2-366, gnl|mm7|chr7 (45852129-45852443)
               

               
               2-366, gnl|Mm7|chr7 (45852531-45852159)
               

               
               2-366, gnl|monDom2|scaffold_10 (66350613-66350923)
               

               
               2-366, gnl|oryCun1|scaffold_153323 (916-613)
               

               
               2-366, gnl|panTro1|chr9 (20370077-20370388)
               

               
               2-366, gnl|rheMac2|chr14 (51733148-51732827)
               

               
               2-366, gnl|rn3|chr1 (99514295-99514598)
               

               
               2-366, gnl|tetNig1|chr5 (12023647-12023404)
               

               
               2-366, gnl|xenTro1|scaffold_557 (617911-618178)

Aligned organism(s): 19 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-366, gnl|bosTau2|chr29 (17426306-17426668)
               

               
               2-366, gnl|canFam2|chr21 (45398294-45398607)
               

               
               2-366, gnl|danRer3|chr7 (7394549-7394840)
               

               
               2-366, gnl|dasNov1|scaffold_7061 (29311-29612)
               

               
               2-366, gnl|echTel1|scaffold_316374 (105552-105859)
               

               
               2-366, gnl|fr1|chrUn (69041113-69040870)
               

               
               2-366, gnl|galGal2|chr5 (1417099-1416800)
               

               
               2-366, gnl|hg17|chr11 (20133111-20133424)
               

               
               2-366, gnl|Hg17|chr11 (20133529-20133141)
               

               
               2-366, gnl|loxAfr1|scaffold_6018 (12482-12173)
               

               
               2-366, gnl|mm7|chr7 (45852129-45852443)
               

               
               2-366, gnl|Mm7|chr7 (45852531-45852159)
               

               
               2-366, gnl|monDom2|scaffold_10 (66350613-66350923)
               

               
               2-366, gnl|oryCun1|scaffold_153323 (916-613)
               

               
               2-366, gnl|panTro1|chr9 (20370077-20370388)
               

               
               2-366, gnl|rheMac2|chr14 (51733148-51732827)
               

               
               2-366, gnl|rn3|chr1 (99514295-99514598)
               

               
               2-366, gnl|tetNig1|chr5 (12023647-12023404)
               

               
               2-366, gnl|xenTro1|scaffold_557 (617911-618178)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               eye (0.170503)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eye (0.170503)

	2-366, gnl\|bosTau2\|chr29 (17426306-17426668)
	2-366, gnl\|canFam2\|chr21 (45398294-45398607)
	2-366, gnl\|danRer3\|chr7 (7394549-7394840)
	2-366, gnl\|dasNov1\|scaffold_7061 (29311-29612)
	2-366, gnl\|echTel1\|scaffold_316374 (105552-105859)
	2-366, gnl\|fr1\|chrUn (69041113-69040870)
	2-366, gnl\|galGal2\|chr5 (1417099-1416800)
	2-366, gnl\|hg17\|chr11 (20133111-20133424)
	2-366, gnl\|Hg17\|chr11 (20133529-20133141)
	2-366, gnl\|loxAfr1\|scaffold_6018 (12482-12173)
	2-366, gnl\|mm7\|chr7 (45852129-45852443)
	2-366, gnl\|Mm7\|chr7 (45852531-45852159)
	2-366, gnl\|monDom2\|scaffold_10 (66350613-66350923)
	2-366, gnl\|oryCun1\|scaffold_153323 (916-613)
	2-366, gnl\|panTro1\|chr9 (20370077-20370388)
	2-366, gnl\|rheMac2\|chr14 (51733148-51732827)
	2-366, gnl\|rn3\|chr1 (99514295-99514598)
	2-366, gnl\|tetNig1\|chr5 (12023647-12023404)
	2-366, gnl\|xenTro1\|scaffold_557 (617911-618178)