Ss1.1-reye1618b_o11.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTTTCTATAATTCCCCCGGTCACACATAAGGACAGGTGGAATTGAGGCGGGAAGAACCCT CGTACCCCATCCCGATGATGTTGGAGCAGCAGAGAGACGATACAGAGGTTCATTGGGCTT TGGTTTTCTAGTGCCTGGATCCAAATGCCCACTAGCTTGTGACCTTTGTTGTGTCATCGT GCCTCGGTTTCCTCATCTGTGTAATGGGGATACTCCAGGCACCACCGACTCGCAAGGTGA AGAGGAAACGAAATAACCTATCTACAGACTTAGGAATGGCTTCTGACTTAGCTACAGACT TAGAACAACTTCTGACACGTAGTTAGATACCCAGTAAATATTAGTATGGTTATCTATCAG TAAGCTGAGCTGCGGTAGGCATTCTCCCCTCCCTTCCTCCATCCTTGCGCCAGTCTGGTC TGGTGATGCCATGAACACATCACTCCCTTTTGGGACCTGACTCCCACCCTCTGAGGACCC TCAGAAATCCTGAGACGAGTTAGCCCCCCTCCCCAGCCTCCTCCTATAGTGGTTGGCCAT AGTGGGGAAGCC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTTTCTATAATTCCCCCGGTCACACATAAGGACAGGTGGAATTGAGGCGGGAAGAACCCT CGTACCCCATCCCGATGATGTTGGAGCAGCAGAGAGACGATACAGAGGTTCATTGGGCTT TGGTTTTCTAGTGCCTGGATCCAAATGCCCACTAGCTTGTGACCTTTGTTGTGTCATCGT GCCTCGGTTTCCTCATCTGTGTAATGGGGATACTCCAGGCACCACCGACTCGCAAGGTGA AGAGGAAACGAAATAACCTATCTACAGACTTAGGAATGGCTTCTGACTTAGCTACAGACT TAGAACAACTTCTGACACGTAGTTAGATACCCAGTAAATATTAGTATGGTTATCTATCAG TAAGCTGAGCTGCGGTAGGCATTCTCCCCTCCCTTCCTCCATCCTTGCGCCAGTCTGGTC TGGTGATGCCATGAACACATCACTCCCTTTTGGGACCTGACTCCCACCCTCTGAGGACCC TCAGAAATCCTGAGACGAGTTAGCCCCCCTCCCCAGCCTCCTCCTATAGTGGTTGGCCAT AGTGGGGAAGCC |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 1-100, - strand, RNAz p=0.99605 | |
| 382-499, - strand, RNAz p=0.991986 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1-100, - strand, RNAz p=0.99605 | |
| 382-499, - strand, RNAz p=0.991986 |
| Aligned organism(s): 26 entry(ies) | More info |
| Aligned organism(s): 26 entry(ies) | Help | Less info |
| 1-273, gnl|bosTau2|chr18 (19661583-19661313) | |
| 1-273, gnl|canFam2|chr2 (64581208-64580523) | |
| 1-273, gnl|dasNov1|scaffold_8219 (35144-34509) | |
| 1-273, gnl|echTel1|scaffold_310693 (45223-45887) | |
| 1-273, gnl|hg17|chr16 (52703995-52704669) | |
| 1-273, gnl|Hg17|chr16 (52704243-52704503) | |
| 1-273, gnl|loxAfr1|scaffold_2541 (62410-61714) | |
| 1-273, gnl|mm7|chr8 (90259614-90260248) | |
| 1-273, gnl|Mm7|chr8 (90259823-90260087) | |
| 1-273, gnl|oryCun1|scaffold_215106 (156797-156147) | |
| 1-273, gnl|panTro1|chr18 (46754356-46755029) | |
| 1-273, gnl|rheMac2|chr20 (52344865-52345536) | |
| 1-273, gnl|rn3|chr19 (16519038-16518526) | |
| 289-519, gnl|bosTau2|chr18 (19661327-19661098) | |
| 289-519, gnl|canFam2|chr2 (64581208-64580523) | |
| 289-519, gnl|dasNov1|scaffold_8219 (35144-34509) | |
| 289-519, gnl|echTel1|scaffold_310693 (45223-45887) | |
| 289-519, gnl|hg17|chr16 (52703995-52704669) | |
| 289-519, gnl|Hg17|chr16 (52704489-52704720) | |
| 289-519, gnl|loxAfr1|scaffold_2541 (62410-61714) | |
| 289-519, gnl|mm7|chr8 (90259614-90260248) | |
| 289-519, gnl|Mm7|chr8 (90260073-90260282) | |
| 289-519, gnl|oryCun1|scaffold_215106 (156797-156147) | |
| 289-519, gnl|panTro1|chr18 (46754356-46755029) | |
| 289-519, gnl|rheMac2|chr20 (52344865-52345536) | |
| 289-519, gnl|rn3|chr19 (16519038-16518526) |
| Aligned organism(s): 26 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-273, gnl|bosTau2|chr18 (19661583-19661313) | |
| 1-273, gnl|canFam2|chr2 (64581208-64580523) | |
| 1-273, gnl|dasNov1|scaffold_8219 (35144-34509) | |
| 1-273, gnl|echTel1|scaffold_310693 (45223-45887) | |
| 1-273, gnl|hg17|chr16 (52703995-52704669) | |
| 1-273, gnl|Hg17|chr16 (52704243-52704503) | |
| 1-273, gnl|loxAfr1|scaffold_2541 (62410-61714) | |
| 1-273, gnl|mm7|chr8 (90259614-90260248) | |
| 1-273, gnl|Mm7|chr8 (90259823-90260087) | |
| 1-273, gnl|oryCun1|scaffold_215106 (156797-156147) | |
| 1-273, gnl|panTro1|chr18 (46754356-46755029) | |
| 1-273, gnl|rheMac2|chr20 (52344865-52345536) | |
| 1-273, gnl|rn3|chr19 (16519038-16518526) | |
| 289-519, gnl|bosTau2|chr18 (19661327-19661098) | |
| 289-519, gnl|canFam2|chr2 (64581208-64580523) | |
| 289-519, gnl|dasNov1|scaffold_8219 (35144-34509) | |
| 289-519, gnl|echTel1|scaffold_310693 (45223-45887) | |
| 289-519, gnl|hg17|chr16 (52703995-52704669) | |
| 289-519, gnl|Hg17|chr16 (52704489-52704720) | |
| 289-519, gnl|loxAfr1|scaffold_2541 (62410-61714) | |
| 289-519, gnl|mm7|chr8 (90259614-90260248) | |
| 289-519, gnl|Mm7|chr8 (90260073-90260282) | |
| 289-519, gnl|oryCun1|scaffold_215106 (156797-156147) | |
| 289-519, gnl|panTro1|chr18 (46754356-46755029) | |
| 289-519, gnl|rheMac2|chr20 (52344865-52345536) | |
| 289-519, gnl|rn3|chr19 (16519038-16518526) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| eye (0.170503) | |
| cov (0.132153) | |
| ebs (0.118301) |