Ss1.1-reye1621b_i22.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCTGAAGACTGAAGGGTTCACATTGGAGTCCTGCCGTAGCATGATTGCTCTCATGGATAC AGACGGCTCTGGAAGACTGAACCTGCAAGAGTTCCACCACCTCTGGAAGAAGATTAAATC CTGGCAGAAAATTTTCAAGCATTATGACACCGACCAATCCGGCACCATCAACAGCTATGA GATGCGAAATGCAGTCAATGACGCAGGCTTCCACCTCAACAACCAGCTCTATGACATCAT CACCATGCGGTACGCAGACAAGTACATGAACATCGACTTTGACAGTTTTATCTGCTGCTT CGTCAGGCTGGAGGGCATGTTCAGAGCTTTTAATGCCTTTGACAAGGATGGAGATGGTAT CATCAAACTCAATGTTCTAGAGTGGCTGCAGCTCACCATGTATGCCTGAACCAGCCAAGC TGGCCTCATCCAGGGCCAGGCAGAATCGCTCAGGATTTCAGTGTCACCCAACAGAGCTAG AGCCCTTACCTCCAAGGACACGGCAGCTGCACCCCCAGCAGACCTTCAGGTGCCTCATCG GTCTTGTTCTTCCTCTACTCACTGCCCTGTCAGTCTCAGGGCATCTCTCATCTTGTCATG CCCAGCCTGGCCCTTTAGTTAAGGAATGGAAGGAGGGAGAACAACTGTCCCTCCACCACC TGGACACAAGGGTCTCTGTCTGCCTCAGTGAGCCAGAACCTGGTGAGAACTTTGCTCGGA GTGGCCTCAGCTCCAAAGCCAATGCTCCCCTAAGCTTGCCCTAGGCTGTTCGCAGAAGCA TTTGCCAATGGCACTCAGCACTTCCTGGTGCTGGACCCCTCTATCACTTCTGCGGTCTCC CACCCCTGGGACAGTAACCCAGTAAGCACTTGGTTCTTCTGCCTGATTGTTTCAGGATGA GCCTGCTCTGCAGTAAACTAGCTCGGGGCAGAGGGCTGGACACAGTGGGTTACCTGACTC ATAAGTTTGGCTGTATTCTAAAAAAAAGGTGATCTAAATAAAGGCACA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCTGAAGACTGAAGGGTTCACATTGGAGTCCTGCCGTAGCATGATTGCTCTCATGGATAC AGACGGCTCTGGAAGACTGAACCTGCAAGAGTTCCACCACCTCTGGAAGAAGATTAAATC CTGGCAGAAAATTTTCAAGCATTATGACACCGACCAATCCGGCACCATCAACAGCTATGA GATGCGAAATGCAGTCAATGACGCAGGCTTCCACCTCAACAACCAGCTCTATGACATCAT CACCATGCGGTACGCAGACAAGTACATGAACATCGACTTTGACAGTTTTATCTGCTGCTT CGTCAGGCTGGAGGGCATGTTCAGAGCTTTTAATGCCTTTGACAAGGATGGAGATGGTAT CATCAAACTCAATGTTCTAGAGTGGCTGCAGCTCACCATGTATGCCTGAACCAGCCAAGC TGGCCTCATCCAGGGCCAGGCAGAATCGCTCAGGATTTCAGTGTCACCCAACAGAGCTAG AGCCCTTACCTCCAAGGACACGGCAGCTGCACCCCCAGCAGACCTTCAGGTGCCTCATCG GTCTTGTTCTTCCTCTACTCACTGCCCTGTCAGTCTCAGGGCATCTCTCATCTTGTCATG CCCAGCCTGGCCCTTTAGTTAAGGAATGGAAGGAGGGAGAACAACTGTCCCTCCACCACC TGGACACAAGGGTCTCTGTCTGCCTCAGTGAGCCAGAACCTGGTGAGAACTTTGCTCGGA GTGGCCTCAGCTCCAAAGCCAATGCTCCCCTAAGCTTGCCCTAGGCTGTTCGCAGAAGCA TTTGCCAATGGCACTCAGCACTTCCTGGTGCTGGACCCCTCTATCACTTCTGCGGTCTCC CACCCCTGGGACAGTAACCCAGTAAGCACTTGGTTCTTCTGCCTGATTGTTTCAGGATGA GCCTGCTCTGCAGTAAACTAGCTCGGGGCAGAGGGCTGGACACAGTGGGTTACCTGACTC ATAAGTTTGGCTGTATTCTAAAAAAAAGGTGATCTAAATAAAGGCACA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 499-654, - strand, RNAz p=0.652972 | |
| 695-846, - strand, RNAz p=0.993077 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 499-654, - strand, RNAz p=0.652972 | |
| 695-846, - strand, RNAz p=0.993077 |
| Aligned organism(s): 21 entry(ies) | More info |
| Aligned organism(s): 21 entry(ies) | Help | Less info |
| 204-324, gnl|bosTau2|chr10 (17235280-17235400) | |
| 204-324, gnl|canFam2|chr30 (12374896-12375036) | |
| 204-324, gnl|danRer3|chrUn (183506448-183506320) | |
| 204-324, gnl|dasNov1|scaffold_121276 (7000-7138) | |
| 204-324, gnl|echTel1|scaffold_309926 (89270-89133) | |
| 204-324, gnl|fr1|chrUn (181867219-181867079) | |
| 204-324, gnl|galGal2|chr5 (22925199-22925335) | |
| 204-324, gnl|hg17|chr15 (40490360-40490500) | |
| 204-324, gnl|Hg17|chr15 (40490371-40490491) | |
| 204-324, gnl|loxAfr1|scaffold_7688 (41303-41174) | |
| 204-324, gnl|mm7|chr2 (120244188-120244321) | |
| 204-324, gnl|Mm7|chr2 (120244197-120244315) | |
| 204-324, gnl|monDom2|scaffold_53 (12130266-12130137) | |
| 204-324, gnl|oryCun1|scaffold_204530 (44412-44541) | |
| 204-324, gnl|panTro1|chr16 (40470953-40471093) | |
| 204-324, gnl|rheMac2|chr7 (20840527-20840667) | |
| 204-324, gnl|rn3|chr3 (106893174-106893307) | |
| 204-324, gnl|tetNig1|chr10 (11782356-11782483) | |
| 204-324, gnl|xenTro1|scaffold_117 (951885-951751) | |
| 381-846, gnl|bosTau2|chr10 (17236103-17236567) | |
| 381-846, gnl|Hg17|chr15 (40491235-40491636) |
| Aligned organism(s): 21 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 204-324, gnl|bosTau2|chr10 (17235280-17235400) | |
| 204-324, gnl|canFam2|chr30 (12374896-12375036) | |
| 204-324, gnl|danRer3|chrUn (183506448-183506320) | |
| 204-324, gnl|dasNov1|scaffold_121276 (7000-7138) | |
| 204-324, gnl|echTel1|scaffold_309926 (89270-89133) | |
| 204-324, gnl|fr1|chrUn (181867219-181867079) | |
| 204-324, gnl|galGal2|chr5 (22925199-22925335) | |
| 204-324, gnl|hg17|chr15 (40490360-40490500) | |
| 204-324, gnl|Hg17|chr15 (40490371-40490491) | |
| 204-324, gnl|loxAfr1|scaffold_7688 (41303-41174) | |
| 204-324, gnl|mm7|chr2 (120244188-120244321) | |
| 204-324, gnl|Mm7|chr2 (120244197-120244315) | |
| 204-324, gnl|monDom2|scaffold_53 (12130266-12130137) | |
| 204-324, gnl|oryCun1|scaffold_204530 (44412-44541) | |
| 204-324, gnl|panTro1|chr16 (40470953-40471093) | |
| 204-324, gnl|rheMac2|chr7 (20840527-20840667) | |
| 204-324, gnl|rn3|chr3 (106893174-106893307) | |
| 204-324, gnl|tetNig1|chr10 (11782356-11782483) | |
| 204-324, gnl|xenTro1|scaffold_117 (951885-951751) | |
| 381-846, gnl|bosTau2|chr10 (17236103-17236567) | |
| 381-846, gnl|Hg17|chr15 (40491235-40491636) |
| Expressed library(ies): 5 entry(ies) | More info |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
| tes (0.207814) | |
| nlu (0.191681) | |
| ton (0.1755) | |
| eye (0.170503) | |
| ldo (0.0970026) |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| tes (0.207814) | |
| nlu (0.191681) | |
| ton (0.1755) | |
| eye (0.170503) | |
| ldo (0.0970026) |