Non-Coding RNA Search

Ss1.1-reye1622b_p22.5

Sequence:


               
               GGGCCCCCGCTCCCCGAGGGGCCTTGCCCTCCTGGCTACATACAAACGAAACTTGGAAAA
GTTGGAGATATTTTTTAACCAGCTGTAGAAATAAGCCGTTCCCTGAGAACCTTCTGCCTG
AATCCCTGCAGCTTCAGCCCGCTCCCTTTCCAGCCCCCTGGGATGCGGGATGCTGGGGGA
GGCCTGGAGAGAAATTCCCCAAGTTTGGGGTGAGGTGGGAACCATGTAAATATGTGAGAT
ATGTACACACTGGCGGGGAGAAAGAAACATTTTGTGCTTGGTTTTTATTTTTGGTTTTCC
GGGTTGCCCTCCCTCCCCACCCTAAAGGATTTTGTACACCCACTAATCCGAAAAAGATAT
TTTAATATGATTTCCAGATTTCTGATCCATCTCTATTTATTTTCTGGATGTGTTTGGAGC
TTCCCCCCCTTCTCCATTTCTCGTTCTGTTACCTTTGAATTTAAATTTTGTTATTTTATT
TTTATTATTTTTTGGAACAATGTTTTTGGTGCATTCTCTTTGTATCTTTATTGCAAAAAA
ATAATAATAATGTAGACTGGGAAGTTCCCTTTATATTTATGTTATAGTAAATATTTTATT
ACTCACATAAACATGTACCCCGGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGCCCCCGCTCCCCGAGGGGCCTTGCCCTCCTGGCTACATACAAACGAAACTTGGAAAA
GTTGGAGATATTTTTTAACCAGCTGTAGAAATAAGCCGTTCCCTGAGAACCTTCTGCCTG
AATCCCTGCAGCTTCAGCCCGCTCCCTTTCCAGCCCCCTGGGATGCGGGATGCTGGGGGA
GGCCTGGAGAGAAATTCCCCAAGTTTGGGGTGAGGTGGGAACCATGTAAATATGTGAGAT
ATGTACACACTGGCGGGGAGAAAGAAACATTTTGTGCTTGGTTTTTATTTTTGGTTTTCC
GGGTTGCCCTCCCTCCCCACCCTAAAGGATTTTGTACACCCACTAATCCGAAAAAGATAT
TTTAATATGATTTCCAGATTTCTGATCCATCTCTATTTATTTTCTGGATGTGTTTGGAGC
TTCCCCCCCTTCTCCATTTCTCGTTCTGTTACCTTTGAATTTAAATTTTGTTATTTTATT
TTTATTATTTTTTGGAACAATGTTTTTGGTGCATTCTCTTTGTATCTTTATTGCAAAAAA
ATAATAATAATGTAGACTGGGAAGTTCCCTTTATATTTATGTTATAGTAAATATTTTATT
ACTCACATAAACATGTACCCCGGA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               112-427, - strand, RNAz p=0.771388
               

               
               515-621, - strand, RNAz p=0.946219

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               112-427, - strand, RNAz p=0.771388
               

               
               515-621, - strand, RNAz p=0.946219

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-621, gnl|bosTau2|chr3 (74634357-74634972)
               

               
               1-621, gnl|Hg17|chr1 (38179213-38178595)
               

               
               1-621, gnl|Mm7|chr4 (124104674-124105299)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-621, gnl|bosTau2|chr3 (74634357-74634972)
               

               
               1-621, gnl|Hg17|chr1 (38179213-38178595)
               

               
               1-621, gnl|Mm7|chr4 (124104674-124105299)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               eye (0.170503)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eye (0.170503)

	112-427, - strand, RNAz p=0.771388
	515-621, - strand, RNAz p=0.946219

	1-621, gnl\|bosTau2\|chr3 (74634357-74634972)
	1-621, gnl\|Hg17\|chr1 (38179213-38178595)
	1-621, gnl\|Mm7\|chr4 (124104674-124105299)