Non-Coding RNA Search

Ss1.1-reye1623b_f13.5

Sequence:


               
               CTGGTGGTTGTCAAGAAACAAAAGACCAAAAGAGCCTTTTTGTCTTTCTTTTTTATTTTT
TAAGTATTGGAATAAGTCTAAAGAAAAGAAAGTGCCTTATTTTCCTTCATGGTCATTTAG
TCAAGTGTTTGTAAGATCAGCTCCTCCCTCAGAATACAAGTTAATGCATGTTACTCAGTC
GCCCAGTATGTGAAAGAAGATAAGAGGGGAGACAAATGAGTTGATGGTTTGAATTATATG
ATTTTTGCCACGTTACCTTGATATAAATTTGCCAAATCTGATACTGTGAAAAAACTCGAT
AACTTCTTTTGTAATGCCCAACAAGTTTTAAAATATTCTTTTAAAATCATAATTGCTTTT
GATTATTTCAGTATTTAATGTTAGCCCAAAGAATTCTGACATAAAAATTATGTATGATCT
GAACATCAGTTTACAGACAAAATTAGGGCTTCTGTTTTATTCAAGGGGGGTGTGGGTTTG
CTGGATTTTTTTCTTATAAATTGGCAGTAATAGTATACCTATAGTGATCTTTTTCACGAA
TTGAATATTTGTGATTTTCATTCTGGAAAACAAATGTTTTTAGCGACCTAAGCCACCCCC
CCACCACACCCCCCCCTTGACTTTAAAAGAATGTGAAAGACTAGCATCATTGTGCATGTA
AATATACTCAACTACATGTGATTTTTAAACTTCCAATTTCTTTGGAGTTCAGTTAGTTTT
GTAGTTGAAGTGATGTGTGCACAAAACTTCCATCTAACTCTCAAGTGGTCATTAACTGCT
CAGTACCAGATGTGGCAAATAGCAAGGGGCAGTGGATCCCCAGCTCATCAGCTCCTCCCT
CTTAACACCTTCACAGCTTCACAAAGGTCAGCAGTAAGCTCAGTAAGCACCTTCACGGTG
ACCTCTTCATCATCTTGTCTCACTCGGAAATCGTTTTCAGTTTATTTACTATGCAATAGA
CATTCATTGTTTCGTATTCAGCTAGCTTTGGTTTAATGCGCCACTGCTTTGTCTTTCTGT
TACATATACAGTTGTTTTGATTTATTTACAATATATGCTGTGCCATTTTGATTTTTACTT
TGGTTGGTTGAATAAATTTGCGACACTCAAAACACTTGAGGTGGTAGTTTAAAAAAGATA
CCAGTATTTGATCCAGTTTCATCTCAGCTATGTTATACCTGGACATTTTAGATGTTTATC
AAAGGTCTTTTATGGGGAAGAAAGTAAATGTATGAAATAAATGTGTGACATTTATGAGTA
ATGTTGGCTCTGAACAAACTTTTGAAAACTTAGTTGACAAAATTTTGGATCAACTGAAAA
AAAAGCATGACTTTTGAAATCTCTGAATGCCTTGGTTCTCAGTATTATCATACTTTATTG
AATTTATTTCTTATTAAAATACGTAGTTTTTAAGACTTTTTTTCTGACAGTATTATGTAA
TTTTTTAGCGCGGGTAGATGGGAGTGTCGCTTGTATGTTACCGTACAGCTGACATGTATT
TTTGTCTATTCTTTATTATCTTAGTAGTTTCATGCTATGTATGTACCATAACCAACCTAT
TGCCTATGAGAAACATGTAAGATAATGTATTTACAGCCATTGTTACAAGTTTATAATGTA
TTTTTCTATCTTGTTTTATATGTATGTTATATAACATTCAAAAAGAATTTTTTTCTTGAT
TGAGAAAAGGATACAAGATGCAAAATCCACAATTTTGATAACTGAAAATTGCCAATTGTT
TTGCAGTACTTTATTATATTGGGTGTCTTGTCTTTCTTGGGCTTTTAGTTAGCTAATGAA
TGAGTACATTAGACACTTTTGGGTTTTAGTTGGGATTTTACATAGCTTGCATTTTAATTC
TTTGGTTCTTTGCTGTTTCTATTAACCCATAGCATTATTTTAATAAATGTTATAATACCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGGTGGTTGTCAAGAAACAAAAGACCAAAAGAGCCTTTTTGTCTTTCTTTTTTATTTTT
TAAGTATTGGAATAAGTCTAAAGAAAAGAAAGTGCCTTATTTTCCTTCATGGTCATTTAG
TCAAGTGTTTGTAAGATCAGCTCCTCCCTCAGAATACAAGTTAATGCATGTTACTCAGTC
GCCCAGTATGTGAAAGAAGATAAGAGGGGAGACAAATGAGTTGATGGTTTGAATTATATG
ATTTTTGCCACGTTACCTTGATATAAATTTGCCAAATCTGATACTGTGAAAAAACTCGAT
AACTTCTTTTGTAATGCCCAACAAGTTTTAAAATATTCTTTTAAAATCATAATTGCTTTT
GATTATTTCAGTATTTAATGTTAGCCCAAAGAATTCTGACATAAAAATTATGTATGATCT
GAACATCAGTTTACAGACAAAATTAGGGCTTCTGTTTTATTCAAGGGGGGTGTGGGTTTG
CTGGATTTTTTTCTTATAAATTGGCAGTAATAGTATACCTATAGTGATCTTTTTCACGAA
TTGAATATTTGTGATTTTCATTCTGGAAAACAAATGTTTTTAGCGACCTAAGCCACCCCC
CCACCACACCCCCCCCTTGACTTTAAAAGAATGTGAAAGACTAGCATCATTGTGCATGTA
AATATACTCAACTACATGTGATTTTTAAACTTCCAATTTCTTTGGAGTTCAGTTAGTTTT
GTAGTTGAAGTGATGTGTGCACAAAACTTCCATCTAACTCTCAAGTGGTCATTAACTGCT
CAGTACCAGATGTGGCAAATAGCAAGGGGCAGTGGATCCCCAGCTCATCAGCTCCTCCCT
CTTAACACCTTCACAGCTTCACAAAGGTCAGCAGTAAGCTCAGTAAGCACCTTCACGGTG
ACCTCTTCATCATCTTGTCTCACTCGGAAATCGTTTTCAGTTTATTTACTATGCAATAGA
CATTCATTGTTTCGTATTCAGCTAGCTTTGGTTTAATGCGCCACTGCTTTGTCTTTCTGT
TACATATACAGTTGTTTTGATTTATTTACAATATATGCTGTGCCATTTTGATTTTTACTT
TGGTTGGTTGAATAAATTTGCGACACTCAAAACACTTGAGGTGGTAGTTTAAAAAAGATA
CCAGTATTTGATCCAGTTTCATCTCAGCTATGTTATACCTGGACATTTTAGATGTTTATC
AAAGGTCTTTTATGGGGAAGAAAGTAAATGTATGAAATAAATGTGTGACATTTATGAGTA
ATGTTGGCTCTGAACAAACTTTTGAAAACTTAGTTGACAAAATTTTGGATCAACTGAAAA
AAAAGCATGACTTTTGAAATCTCTGAATGCCTTGGTTCTCAGTATTATCATACTTTATTG
AATTTATTTCTTATTAAAATACGTAGTTTTTAAGACTTTTTTTCTGACAGTATTATGTAA
TTTTTTAGCGCGGGTAGATGGGAGTGTCGCTTGTATGTTACCGTACAGCTGACATGTATT
TTTGTCTATTCTTTATTATCTTAGTAGTTTCATGCTATGTATGTACCATAACCAACCTAT
TGCCTATGAGAAACATGTAAGATAATGTATTTACAGCCATTGTTACAAGTTTATAATGTA
TTTTTCTATCTTGTTTTATATGTATGTTATATAACATTCAAAAAGAATTTTTTTCTTGAT
TGAGAAAAGGATACAAGATGCAAAATCCACAATTTTGATAACTGAAAATTGCCAATTGTT
TTGCAGTACTTTATTATATTGGGTGTCTTGTCTTTCTTGGGCTTTTAGTTAGCTAATGAA
TGAGTACATTAGACACTTTTGGGTTTTAGTTGGGATTTTACATAGCTTGCATTTTAATTC
TTTGGTTCTTTGCTGTTTCTATTAACCCATAGCATTATTTTAATAAATGTTATAATACCA

Aligned organism(s): 9 entry(ies)

More info

Aligned organism(s): 9 entry(ies)

Help | Less info


               
               1-518, gnl|bosTau2|chr9 (61797540-61797024)
               

               
               1-518, gnl|Hg17|chr6 (163963215-163963749)
               

               
               1-518, gnl|Mm7|chr17 (8927278-8926740)
               


               
               763-1920, gnl|bosTau2|chr9 (61796677-61795514)
               

               
               763-1920, gnl|Hg17|chr6 (163964060-163965234)
               

               
               763-1920, gnl|Mm7|chr17 (8926462-8925283)
               


               
               1703-1899, gnl|bosTau2|chr16 (40659382-40659570)
               

               
               1703-1899, gnl|Hg17|chr1 (100331873-100331676)
               

               
               1703-1899, gnl|Mm7|chr17 (8925500-8925304)

Aligned organism(s): 9 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-518, gnl|bosTau2|chr9 (61797540-61797024)
               

               
               1-518, gnl|Hg17|chr6 (163963215-163963749)
               

               
               1-518, gnl|Mm7|chr17 (8927278-8926740)
               


               
               763-1920, gnl|bosTau2|chr9 (61796677-61795514)
               

               
               763-1920, gnl|Hg17|chr6 (163964060-163965234)
               

               
               763-1920, gnl|Mm7|chr17 (8926462-8925283)
               


               
               1703-1899, gnl|bosTau2|chr16 (40659382-40659570)
               

               
               1703-1899, gnl|Hg17|chr1 (100331873-100331676)
               

               
               1703-1899, gnl|Mm7|chr17 (8925500-8925304)

Expressed library(ies): 27 entry(ies)

More info

Expressed library(ies): 27 entry(ies)

Help | Less info


               
               liv (0.438853)
               

               
               tes (0.415628)
               

               
               fbs (0.350693)
               

               
               vin (0.332557)
               

               
               isp (0.300752)
               

               
               bfe (0.299715)
               

               
               lin (0.291206)
               

               
               spl (0.286369)
               

               
               kid (0.259471)
               

               
               ova (0.258264)
               

               
               ret (0.257467)
               

               
               eru (0.240096)
               

               
               hea (0.204499)
               

               
               eje (0.197668)
               

               
               ldo (0.194005)
               

               
               fty (0.17584)
               

               
               eye (0.170503)
               

               
               tbr (0.154178)
               

               
               lnt (0.142308)
               

               
               csk (0.140746)
               

               
               ste (0.135208)
               

               
               tra (0.123092)
               

               
               med (0.116252)
               

               
               cbl (0.114797)
               

               
               jca (0.11396)
               

               
               cty (0.10408)
               

               
               nbm (0.0993246)

Expressed library(ies): 27 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               liv (0.438853)
               

               
               tes (0.415628)
               

               
               fbs (0.350693)
               

               
               vin (0.332557)
               

               
               isp (0.300752)
               

               
               bfe (0.299715)
               

               
               lin (0.291206)
               

               
               spl (0.286369)
               

               
               kid (0.259471)
               

               
               ova (0.258264)
               

               
               ret (0.257467)
               

               
               eru (0.240096)
               

               
               hea (0.204499)
               

               
               eje (0.197668)
               

               
               ldo (0.194005)
               

               
               fty (0.17584)
               

               
               eye (0.170503)
               

               
               tbr (0.154178)
               

               
               lnt (0.142308)
               

               
               csk (0.140746)
               

               
               ste (0.135208)
               

               
               tra (0.123092)
               

               
               med (0.116252)
               

               
               cbl (0.114797)
               

               
               jca (0.11396)
               

               
               cty (0.10408)
               

               
               nbm (0.0993246)

	1-518, gnl\|bosTau2\|chr9 (61797540-61797024)
	1-518, gnl\|Hg17\|chr6 (163963215-163963749)
	1-518, gnl\|Mm7\|chr17 (8927278-8926740)

	763-1920, gnl\|bosTau2\|chr9 (61796677-61795514)
	763-1920, gnl\|Hg17\|chr6 (163964060-163965234)
	763-1920, gnl\|Mm7\|chr17 (8926462-8925283)

	1703-1899, gnl\|bosTau2\|chr16 (40659382-40659570)
	1703-1899, gnl\|Hg17\|chr1 (100331873-100331676)
	1703-1899, gnl\|Mm7\|chr17 (8925500-8925304)

	liv (0.438853)
	tes (0.415628)
	fbs (0.350693)
	vin (0.332557)
	isp (0.300752)
	bfe (0.299715)
	lin (0.291206)
	spl (0.286369)
	kid (0.259471)
	ova (0.258264)
	ret (0.257467)
	eru (0.240096)
	hea (0.204499)
	eje (0.197668)
	ldo (0.194005)
	fty (0.17584)
	eye (0.170503)
	tbr (0.154178)
	lnt (0.142308)
	csk (0.140746)
	ste (0.135208)
	tra (0.123092)
	med (0.116252)
	cbl (0.114797)
	jca (0.11396)
	cty (0.10408)
	nbm (0.0993246)