Non-Coding RNA Search

Ss1.1-reye1623b_p3.5

Sequence:


               
               CAAAGACTCGCCACCTAGTGGCTGACAGAGTTACCATTTGCATGACCAATGCCAACATAA
ATTCAATGCAGCTGGACTCTGTATTTCATAATGAGATTTAAAAATATCATGTGTTAATTT
TAAATATTAAACACTACTTTCCTAAGAAACTAAGTATGTTGCTGATAAAATATTGCTAAA
CACACATACTCACAAATACATGGTAACAATATTCAAAGACTTTTTGAAAATGTGCTTAAA
TGTTACCGCCATTTTCAAAATTCCATATATAACTACTCCACATATAACTATTTTTTTGAA
TATTTGTCAAGTTTCTGATTTTTTAGAATATTTTACATCTGTATTTTCATTACTGTTTAT
TAGACAGATAAAAGAATAAAAAGATATTACCAAGTATTATTACTTCACTAGGGCAGGGAG
ATAAGCTTTATTTTAATTAAAAGTGTTCTGACATTTGAGTTTATATTTTGATATTCTGAC
AATTCTGCTGTGATAATGAACCGTGGGCCTTTAACTATTATAGAATTAAAGTCCATTGTA
AAGGGATTCAGAGAATCAGTTCCTTATCACAGGTTGTGATACTCTATTTCCTTTTATGCT
TATTTCTATTATGCTTTAAGGGGGGATTTGTAACCGATCAAGCATATTCAAGTTTTCTGG
TTTGTGCTGCCTCTAAAATTAAACACGCCAAACTAATGAAAGCATACAGCACAAAATCAC
TAGAAACAACAGTACTTTTAAAAAGAAAGAATGCATAACTGCTCTGATATTTCAGTGCAA
GTCACCTAACATGGATTCAGTGCTTTTCTTGAGATTATACATCTAGGAAATAACAGAGTT
AAGACTAGGACCAAAATTCTGTTACATCTTAGGTAATTAGAAGATACAAAACATACATTG
AATCCGAAGCATCGGATTTTTAAAAATTTTTTAACTGTCCTTGATAAGAGATACTAAAAA
ATCGTATATTGTCCTAGAAAACATAAGATAATGCACTTCAAGGTGAATAAAAACATAGAT
TTTTTTTTCTGTTGAATTGATAAATCAAGTTTTTAAATAGGTGGTTCGTCCGTGATCTAA
CCAGAAATTATCTTTGGTTCTGTAATGATATAAATTCCAAGTAAATAAAGCATTGCTCCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAAAGACTCGCCACCTAGTGGCTGACAGAGTTACCATTTGCATGACCAATGCCAACATAA
ATTCAATGCAGCTGGACTCTGTATTTCATAATGAGATTTAAAAATATCATGTGTTAATTT
TAAATATTAAACACTACTTTCCTAAGAAACTAAGTATGTTGCTGATAAAATATTGCTAAA
CACACATACTCACAAATACATGGTAACAATATTCAAAGACTTTTTGAAAATGTGCTTAAA
TGTTACCGCCATTTTCAAAATTCCATATATAACTACTCCACATATAACTATTTTTTTGAA
TATTTGTCAAGTTTCTGATTTTTTAGAATATTTTACATCTGTATTTTCATTACTGTTTAT
TAGACAGATAAAAGAATAAAAAGATATTACCAAGTATTATTACTTCACTAGGGCAGGGAG
ATAAGCTTTATTTTAATTAAAAGTGTTCTGACATTTGAGTTTATATTTTGATATTCTGAC
AATTCTGCTGTGATAATGAACCGTGGGCCTTTAACTATTATAGAATTAAAGTCCATTGTA
AAGGGATTCAGAGAATCAGTTCCTTATCACAGGTTGTGATACTCTATTTCCTTTTATGCT
TATTTCTATTATGCTTTAAGGGGGGATTTGTAACCGATCAAGCATATTCAAGTTTTCTGG
TTTGTGCTGCCTCTAAAATTAAACACGCCAAACTAATGAAAGCATACAGCACAAAATCAC
TAGAAACAACAGTACTTTTAAAAAGAAAGAATGCATAACTGCTCTGATATTTCAGTGCAA
GTCACCTAACATGGATTCAGTGCTTTTCTTGAGATTATACATCTAGGAAATAACAGAGTT
AAGACTAGGACCAAAATTCTGTTACATCTTAGGTAATTAGAAGATACAAAACATACATTG
AATCCGAAGCATCGGATTTTTAAAAATTTTTTAACTGTCCTTGATAAGAGATACTAAAAA
ATCGTATATTGTCCTAGAAAACATAAGATAATGCACTTCAAGGTGAATAAAAACATAGAT
TTTTTTTTCTGTTGAATTGATAAATCAAGTTTTTAAATAGGTGGTTCGTCCGTGATCTAA
CCAGAAATTATCTTTGGTTCTGTAATGATATAAATTCCAAGTAAATAAAGCATTGCTCCA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-1140, gnl|bosTau2|chr2 (3154983-3153843)
               

               
               1-1140, gnl|Hg17|chr2 (189667080-189668203)
               

               
               1-1140, gnl|Mm7|chr1 (45550742-45552151)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1140, gnl|bosTau2|chr2 (3154983-3153843)
               

               
               1-1140, gnl|Hg17|chr2 (189667080-189668203)
               

               
               1-1140, gnl|Mm7|chr1 (45550742-45552151)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               eye (0.170503)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eye (0.170503)

	1-1140, gnl\|bosTau2\|chr2 (3154983-3153843)
	1-1140, gnl\|Hg17\|chr2 (189667080-189668203)
	1-1140, gnl\|Mm7\|chr1 (45550742-45552151)