Non-Coding RNA Search

Ss1.1-reye1624b_a15.5

Sequence:


               
               GCCTGGCCCCCGGCTGGAACCTGCGGGTCCAGGACACTCTGACTCTGGAGAGGACAAGTT
CGAGATCAACTTCTTGTCGGAGGCGGGGGACATTGTCTTCCACATCAAGCCCCGCTTCTC
CAGCGCCAGCATCGTGGCCAACACCTTCCAGGGCGGTCGCTGGGGCCAGGAGGAGGTGTC
CACCGTCTTCCCGCTGGTGCTCGGGGAGCCCTTCGAGATGGAGGTCAGCTCGGACGCGGA
GCACTTCCACGTCCACGCCCAGGAGCACAAGGTGCTGCAGTTCGCCCACCGCCACAGGCC
GCTGGCCGCCATCACCCGGGTGCAGGTGCTGAGTGACCACCGGCTGGCCCAGGTGGAGCT
GGCCAGGAGAGGCCTGAGCTGGGGGGAAGGGGGCTACTGAGCTGTGCCTGAAGTCCCAGG
AGCGAGCCATGGCCATTGGCCACCCCACGTCCAGTGAAGCCCACCTTGGGGAAGTTGGGG
GGAGGGCTCTGTAGTCCTGGGCACCCCCCCGCCCCCCGCCCCCGTTCCAGCTCTACCTTC
AATAAAGTCTAAGCAGGCTGCAGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCTGGCCCCCGGCTGGAACCTGCGGGTCCAGGACACTCTGACTCTGGAGAGGACAAGTT
CGAGATCAACTTCTTGTCGGAGGCGGGGGACATTGTCTTCCACATCAAGCCCCGCTTCTC
CAGCGCCAGCATCGTGGCCAACACCTTCCAGGGCGGTCGCTGGGGCCAGGAGGAGGTGTC
CACCGTCTTCCCGCTGGTGCTCGGGGAGCCCTTCGAGATGGAGGTCAGCTCGGACGCGGA
GCACTTCCACGTCCACGCCCAGGAGCACAAGGTGCTGCAGTTCGCCCACCGCCACAGGCC
GCTGGCCGCCATCACCCGGGTGCAGGTGCTGAGTGACCACCGGCTGGCCCAGGTGGAGCT
GGCCAGGAGAGGCCTGAGCTGGGGGGAAGGGGGCTACTGAGCTGTGCCTGAAGTCCCAGG
AGCGAGCCATGGCCATTGGCCACCCCACGTCCAGTGAAGCCCACCTTGGGGAAGTTGGGG
GGAGGGCTCTGTAGTCCTGGGCACCCCCCCGCCCCCCGCCCCCGTTCCAGCTCTACCTTC
AATAAAGTCTAAGCAGGCTGCAGG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61808619|ref|XP_606783.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61808619|ref|XP_606783.1|

Aligned organism(s): 10 entry(ies)

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Aligned organism(s): 10 entry(ies)

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               216-388, gnl|bosTau2|chr25 (39112364-39112536)
               

               
               216-388, gnl|canFam2|chr6 (17683792-17683603)
               

               
               216-388, gnl|hg17|chr7 (2287980-2288189)
               

               
               216-388, gnl|Hg17|chr7 (2288185-2288013)
               

               
               216-388, gnl|mm7|chr5 (139534461-139534671)
               

               
               216-388, gnl|Mm7|chr5 (139534667-139534495)
               

               
               216-388, gnl|monDom2|scaffold_44 (14698567-14698351)
               

               
               216-388, gnl|panTro1|chr6 (2495656-2495865)
               

               
               216-388, gnl|rheMac2|chr3 (40478588-40478800)
               

               
               216-388, gnl|rn3|chr12 (14578991-14578779)

Aligned organism(s): 10 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               216-388, gnl|bosTau2|chr25 (39112364-39112536)
               

               
               216-388, gnl|canFam2|chr6 (17683792-17683603)
               

               
               216-388, gnl|hg17|chr7 (2287980-2288189)
               

               
               216-388, gnl|Hg17|chr7 (2288185-2288013)
               

               
               216-388, gnl|mm7|chr5 (139534461-139534671)
               

               
               216-388, gnl|Mm7|chr5 (139534667-139534495)
               

               
               216-388, gnl|monDom2|scaffold_44 (14698567-14698351)
               

               
               216-388, gnl|panTro1|chr6 (2495656-2495865)
               

               
               216-388, gnl|rheMac2|chr3 (40478588-40478800)
               

               
               216-388, gnl|rn3|chr12 (14578991-14578779)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               eye (0.682012)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eye (0.682012)

	216-388, gnl\|bosTau2\|chr25 (39112364-39112536)
	216-388, gnl\|canFam2\|chr6 (17683792-17683603)
	216-388, gnl\|hg17\|chr7 (2287980-2288189)
	216-388, gnl\|Hg17\|chr7 (2288185-2288013)
	216-388, gnl\|mm7\|chr5 (139534461-139534671)
	216-388, gnl\|Mm7\|chr5 (139534667-139534495)
	216-388, gnl\|monDom2\|scaffold_44 (14698567-14698351)
	216-388, gnl\|panTro1\|chr6 (2495656-2495865)
	216-388, gnl\|rheMac2\|chr3 (40478588-40478800)
	216-388, gnl\|rn3\|chr12 (14578991-14578779)