Non-Coding RNA Search

Ss1.1-reye1627b_a9.5

Sequence:


               
               GTAGACGGGACCGCCCCCTCCTCGGATGCCAGCAGAGGCGGCGGATAAGCTTTCCAAGCA
TGCCCTTTCAGAAGCACGTCTACTACCCGCTCGCCAGCGGACTGGAGGGACCCGACGCCG
CCGCGGGGGGCACCGCGGCCATGGTCTGTCCCCCTCCCAGCGTGGCGTCGGGCCCCCTGC
CCTTCTTCCAGTTCCGACCGCGCCTGGAGAGCGTGGACTGGCGGCGGCTGAGCGCCATCG
ACGTGGACAAGGTGGCGGGCGCCGTGGACGTGCTCACGCTGCAGGAGAACATCATGAACA
TCACCTTCTGCAAGCTGGAGGATGAGAAGTGTCCGCACTGCCAGTCGGGGGTGGACCCGG
TGCTGCTGAAGCTCATCCGCCTGGCGCAGCTCACCATTGAGTACCTGCTGCACTCGCAGG
AGTTCCTCACCTCGCAGCTGCACCACCTGGAGGAGCGCCTGCGCCTGAGCCTGGCCGACG
GCGAGCAGAGCAAGAGGCTCCTCAGCAAGCAGGCCGGGGAGATCAAGTTCCTCAAGGAAG
AGTGTAAACGCAGGAAAAAGATGATCTCCACCCAGCAGCTGATGATTGAGGCCAAGGCCA
GCTATTACCAGTGCCATTTTTGTGACAAGGCCTTTATGAACCAAGCTTTCCTACAGAGTC
ACATTCAGCGCCGCCACCCTGAGGATTCTCATCTTGAGTATAAGAAAAGGGCGCAGACTG
ACAAGCTTCAGAATGAGATGGACATGTTGAAGGAGCAGCTGCAGCTTACCAAGTCTCAGC
TGGAGGCTGCACAGCACGCCCACGCAGTCCAAATCTCCAAGGAATATG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTAGACGGGACCGCCCCCTCCTCGGATGCCAGCAGAGGCGGCGGATAAGCTTTCCAAGCA
TGCCCTTTCAGAAGCACGTCTACTACCCGCTCGCCAGCGGACTGGAGGGACCCGACGCCG
CCGCGGGGGGCACCGCGGCCATGGTCTGTCCCCCTCCCAGCGTGGCGTCGGGCCCCCTGC
CCTTCTTCCAGTTCCGACCGCGCCTGGAGAGCGTGGACTGGCGGCGGCTGAGCGCCATCG
ACGTGGACAAGGTGGCGGGCGCCGTGGACGTGCTCACGCTGCAGGAGAACATCATGAACA
TCACCTTCTGCAAGCTGGAGGATGAGAAGTGTCCGCACTGCCAGTCGGGGGTGGACCCGG
TGCTGCTGAAGCTCATCCGCCTGGCGCAGCTCACCATTGAGTACCTGCTGCACTCGCAGG
AGTTCCTCACCTCGCAGCTGCACCACCTGGAGGAGCGCCTGCGCCTGAGCCTGGCCGACG
GCGAGCAGAGCAAGAGGCTCCTCAGCAAGCAGGCCGGGGAGATCAAGTTCCTCAAGGAAG
AGTGTAAACGCAGGAAAAAGATGATCTCCACCCAGCAGCTGATGATTGAGGCCAAGGCCA
GCTATTACCAGTGCCATTTTTGTGACAAGGCCTTTATGAACCAAGCTTTCCTACAGAGTC
ACATTCAGCGCCGCCACCCTGAGGATTCTCATCTTGAGTATAAGAAAAGGGCGCAGACTG
ACAAGCTTCAGAATGAGATGGACATGTTGAAGGAGCAGCTGCAGCTTACCAAGTCTCAGC
TGGAGGCTGCACAGCACGCCCACGCAGTCCAAATCTCCAAGGAATATG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|17224448|gb|AAL36979.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|17224448|gb|AAL36979.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               403-522, - strand, RNAz p=0.722563

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               403-522, - strand, RNAz p=0.722563

Aligned organism(s): 18 entry(ies)

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Aligned organism(s): 18 entry(ies)

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               62-611, gnl|bosTau2|chr12 (37869660-37870224)
               

               
               62-611, gnl|Hg17|chr13 (95092111-95091550)
               

               
               62-611, gnl|Mm7|chr14 (113326948-113326399)
               


               
               696-825, gnl|bosTau2|chr12 (37876662-37876791)
               

               
               696-825, gnl|canFam2|chr22 (49214273-49214418)
               

               
               696-825, gnl|danRer3|chr6 (2352433-2352581)
               

               
               696-825, gnl|dasNov1|scaffold_2751 (62400-62545)
               

               
               696-825, gnl|galGal2|chr1 (138625155-138625008)
               

               
               696-825, gnl|hg17|chr13 (95080228-95080373)
               

               
               696-825, gnl|Hg17|chr13 (95080369-95080240)
               

               
               696-825, gnl|loxAfr1|scaffold_143161 (3550-3403)
               

               
               696-825, gnl|mm7|chr14 (113316490-113316635)
               

               
               696-825, gnl|Mm7|chr14 (113316631-113316502)
               

               
               696-825, gnl|monDom2|scaffold_11 (57610357-57610212)
               

               
               696-825, gnl|oryCun1|scaffold_176793 (55806-55951)
               

               
               696-825, gnl|panTro1|chr14_random (41729540-41729685)
               

               
               696-825, gnl|rheMac2|chr17 (76043446-76043591)
               

               
               696-825, gnl|rn3|chr15 (103869106-103869237)

Aligned organism(s): 18 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               62-611, gnl|bosTau2|chr12 (37869660-37870224)
               

               
               62-611, gnl|Hg17|chr13 (95092111-95091550)
               

               
               62-611, gnl|Mm7|chr14 (113326948-113326399)
               


               
               696-825, gnl|bosTau2|chr12 (37876662-37876791)
               

               
               696-825, gnl|canFam2|chr22 (49214273-49214418)
               

               
               696-825, gnl|danRer3|chr6 (2352433-2352581)
               

               
               696-825, gnl|dasNov1|scaffold_2751 (62400-62545)
               

               
               696-825, gnl|galGal2|chr1 (138625155-138625008)
               

               
               696-825, gnl|hg17|chr13 (95080228-95080373)
               

               
               696-825, gnl|Hg17|chr13 (95080369-95080240)
               

               
               696-825, gnl|loxAfr1|scaffold_143161 (3550-3403)
               

               
               696-825, gnl|mm7|chr14 (113316490-113316635)
               

               
               696-825, gnl|Mm7|chr14 (113316631-113316502)
               

               
               696-825, gnl|monDom2|scaffold_11 (57610357-57610212)
               

               
               696-825, gnl|oryCun1|scaffold_176793 (55806-55951)
               

               
               696-825, gnl|panTro1|chr14_random (41729540-41729685)
               

               
               696-825, gnl|rheMac2|chr17 (76043446-76043591)
               

               
               696-825, gnl|rn3|chr15 (103869106-103869237)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               eye (0.170503)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eye (0.170503)

	62-611, gnl\|bosTau2\|chr12 (37869660-37870224)
	62-611, gnl\|Hg17\|chr13 (95092111-95091550)
	62-611, gnl\|Mm7\|chr14 (113326948-113326399)

	696-825, gnl\|bosTau2\|chr12 (37876662-37876791)
	696-825, gnl\|canFam2\|chr22 (49214273-49214418)
	696-825, gnl\|danRer3\|chr6 (2352433-2352581)
	696-825, gnl\|dasNov1\|scaffold_2751 (62400-62545)
	696-825, gnl\|galGal2\|chr1 (138625155-138625008)
	696-825, gnl\|hg17\|chr13 (95080228-95080373)
	696-825, gnl\|Hg17\|chr13 (95080369-95080240)
	696-825, gnl\|loxAfr1\|scaffold_143161 (3550-3403)
	696-825, gnl\|mm7\|chr14 (113316490-113316635)
	696-825, gnl\|Mm7\|chr14 (113316631-113316502)
	696-825, gnl\|monDom2\|scaffold_11 (57610357-57610212)
	696-825, gnl\|oryCun1\|scaffold_176793 (55806-55951)
	696-825, gnl\|panTro1\|chr14_random (41729540-41729685)
	696-825, gnl\|rheMac2\|chr17 (76043446-76043591)
	696-825, gnl\|rn3\|chr15 (103869106-103869237)