Non-Coding RNA Search

Ss1.1-reye1629b_h4.5

Sequence:


               
               GCGGCCGCTCAGACTGCATCCAAAGGCAATGAAACACTGAAGGATGGAAATGGCCAAGAA
TTCAGAACGTGCAGAAAAATCACTTATCCAGCTCAACCTGAAGAGAAAATCTTTGAGCCT
AATCAACACGGAAAAGCCCTCTACCATAAGCAAGCCCTTAATAAAAGTCCACAAACTCAA
ACTGGTGAGAAACTCTATAAGTGTTCTGAATGTGGAAAAGTGTTTGTCCAGAAAGCAAAC
CTTGTTGTACACCAGAGAACTCACACCGGAGAGAAACCTTATGAATGCTGTGAATGCGCA
------------CAGANATCAACCCACATTCGTTACATTCATAGGGCTTCTCCCCTGTAT
GAGTTCTCTGGTGTGCAATGAGGGGAGAAGCCCTATGAATGTAACGAATGTTGGAAAACA
TTTATCCAGAAGTCAACTCTGACTTAAACATCAGCGACTCATACAGGAGAGAAACCCGTT
TGCATGTGGTGAATGTGCAAAAGCTTTTAAGAGTTCATATCACCTTATTAGACATGAAAA
AACACACATTAGGCAAGCATTTTGTGAAGGTATCAAATGTGCTAAGTCCAGCCTTATACA
TCAAAGGACTCATATGGGTGAGAAACCTGAGTGCAATAAACATGGGAAAGCTTTTGATGA
GACACCTACCCCCACTAAACATCAGAGAACTCATGCAAGAGAGAAACCTTATGAGTGCAA
TAAATGTGGAAGAGACTTCAGGAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGGCCGCTCAGACTGCATCCAAAGGCAATGAAACACTGAAGGATGGAAATGGCCAAGAA
TTCAGAACGTGCAGAAAAATCACTTATCCAGCTCAACCTGAAGAGAAAATCTTTGAGCCT
AATCAACACGGAAAAGCCCTCTACCATAAGCAAGCCCTTAATAAAAGTCCACAAACTCAA
ACTGGTGAGAAACTCTATAAGTGTTCTGAATGTGGAAAAGTGTTTGTCCAGAAAGCAAAC
CTTGTTGTACACCAGAGAACTCACACCGGAGAGAAACCTTATGAATGCTGTGAATGCGCA
------------CAGANATCAACCCACATTCGTTACATTCATAGGGCTTCTCCCCTGTAT
GAGTTCTCTGGTGTGCAATGAGGGGAGAAGCCCTATGAATGTAACGAATGTTGGAAAACA
TTTATCCAGAAGTCAACTCTGACTTAAACATCAGCGACTCATACAGGAGAGAAACCCGTT
TGCATGTGGTGAATGTGCAAAAGCTTTTAAGAGTTCATATCACCTTATTAGACATGAAAA
AACACACATTAGGCAAGCATTTTGTGAAGGTATCAAATGTGCTAAGTCCAGCCTTATACA
TCAAAGGACTCATATGGGTGAGAAACCTGAGTGCAATAAACATGGGAAAGCTTTTGATGA
GACACCTACCCCCACTAAACATCAGAGAACTCATGCAAGAGAGAAACCTTATGAGTGCAA
TAAATGTGGAAGAGACTTCAGGAG

Aligned organism(s): 4 entry(ies)

More info

Aligned organism(s): 4 entry(ies)

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               90-314, gnl|bosTau2|chrX (29045840-29045616)
               

               
               90-314, gnl|Mm7|chr5 (109294038-109294487)
               


               
               369-730, gnl|bosTau2|chrX (29045579-29045219)
               

               
               369-730, gnl|Mm7|chr5 (109294524-109294899)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               90-314, gnl|bosTau2|chrX (29045840-29045616)
               

               
               90-314, gnl|Mm7|chr5 (109294038-109294487)
               


               
               369-730, gnl|bosTau2|chrX (29045579-29045219)
               

               
               369-730, gnl|Mm7|chr5 (109294524-109294899)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               eye (0.170503)
               

               
               kid (0.129735)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eye (0.170503)
               

               
               kid (0.129735)

	90-314, gnl\|bosTau2\|chrX (29045840-29045616)
	90-314, gnl\|Mm7\|chr5 (109294038-109294487)

	369-730, gnl\|bosTau2\|chrX (29045579-29045219)
	369-730, gnl\|Mm7\|chr5 (109294524-109294899)