Non-Coding RNA Search

Ss1.1-reye1632b_l3.5

Sequence:


               
               AGCGCTCCGCATCCGGTGGCAGGGTCTGGGGAAGGGGCGGTAGGCGCCATGTCGGGCCGC
GAAGGTGGCAAGAAGAAGCCCCTGAAGCAGCCCAAGAAACAGGCCAAGGAGATGGACGAG
GAAGATAAGGCATTCAAGCAGAAACAAAAGGAGGAGCAAAAGAAACTCGAGGAGCTAAAA
GCGAAGGCCGCGGGGAAAGGCCCCTTGGCCACCGGTGGAATTAAGAAATCTGGCAAAAAG
TAAACTGTTCCATTGTGCCTGAGGCAATGATGATTCCATTCCTGTTTAAACATCTGGATT
CCCTGCTATAACATCTTTTGCCACCTATAGCTAGAATGAAGTGTTGTCTTGGAACCTATT
GTACATTTAAGAATAAACTTTTGTAAAAAAAAAAAAAAAAAAAAAAAAAAAGCAGTGACT
TTTCATCTTTGGTTCTTTTCAGTCATTTCTACCTTGGCTATGAGATATAAACCTAGCCCA
GAATCCTGCCAAAGTGCATTCTTTAAGGCATTGTGCTATCCCAAATTCTGTACCACCTGG
GGAATTAAACCAACTCATTTGAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCGCTCCGCATCCGGTGGCAGGGTCTGGGGAAGGGGCGGTAGGCGCCATGTCGGGCCGC
GAAGGTGGCAAGAAGAAGCCCCTGAAGCAGCCCAAGAAACAGGCCAAGGAGATGGACGAG
GAAGATAAGGCATTCAAGCAGAAACAAAAGGAGGAGCAAAAGAAACTCGAGGAGCTAAAA
GCGAAGGCCGCGGGGAAAGGCCCCTTGGCCACCGGTGGAATTAAGAAATCTGGCAAAAAG
TAAACTGTTCCATTGTGCCTGAGGCAATGATGATTCCATTCCTGTTTAAACATCTGGATT
CCCTGCTATAACATCTTTTGCCACCTATAGCTAGAATGAAGTGTTGTCTTGGAACCTATT
GTACATTTAAGAATAAACTTTTGTAAAAAAAAAAAAAAAAAAAAAAAAAAAGCAGTGACT
TTTCATCTTTGGTTCTTTTCAGTCATTTCTACCTTGGCTATGAGATATAAACCTAGCCCA
GAATCCTGCCAAAGTGCATTCTTTAAGGCATTGTGCTATCCCAAATTCTGTACCACCTGG
GGAATTAAACCAACTCATTTGAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q8K003_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q8K003_MOUSE

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               12-251, gnl|bosTau2|chr7 (10887489-10887252)
               

               
               12-251, gnl|Hg17|chr1 (27660035-27660274)
               

               
               12-251, gnl|Mm7|chr1 (9925063-9924833)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               12-251, gnl|bosTau2|chr7 (10887489-10887252)
               

               
               12-251, gnl|Hg17|chr1 (27660035-27660274)
               

               
               12-251, gnl|Mm7|chr1 (9925063-9924833)

Expressed library(ies): 39 entry(ies)

More info

Expressed library(ies): 39 entry(ies)

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               mcp (0.853242)
               

               
               clu (0.598229)
               

               
               col (0.585023)
               

               
               hyp (0.571347)
               

               
               lnt (0.569233)
               

               
               fce (0.543183)
               

               
               eje (0.494169)
               

               
               cbe (0.478469)
               

               
               amn (0.417711)
               

               
               elu (0.385356)
               

               
               nlu (0.383362)
               

               
               cmu (0.372787)
               

               
               ebs (0.354904)
               

               
               fty (0.351679)
               

               
               ecc (0.345105)
               

               
               fhi (0.339155)
               

               
               nca (0.273748)
               

               
               ute (0.265569)
               

               
               ese (0.253004)
               

               
               cly (0.241284)
               

               
               pan (0.23596)
               

               
               ece (0.229305)
               

               
               fbs (0.175346)
               

               
               duo (0.172801)
               

               
               eye (0.170503)
               

               
               cut (0.169924)
               

               
               nje (0.16592)
               

               
               cje (0.165235)
               

               
               csp (0.161186)
               

               
               cag (0.151194)
               

               
               fat (0.147427)
               

               
               csk (0.140746)
               

               
               ssp (0.13552)
               

               
               nmm (0.132802)
               

               
               kid (0.129735)
               

               
               eep (0.122564)
               

               
               eru (0.120048)
               

               
               pgl (0.118483)
               

               
               jej (0.0989218)

Expressed library(ies): 39 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mcp (0.853242)
               

               
               clu (0.598229)
               

               
               col (0.585023)
               

               
               hyp (0.571347)
               

               
               lnt (0.569233)
               

               
               fce (0.543183)
               

               
               eje (0.494169)
               

               
               cbe (0.478469)
               

               
               amn (0.417711)
               

               
               elu (0.385356)
               

               
               nlu (0.383362)
               

               
               cmu (0.372787)
               

               
               ebs (0.354904)
               

               
               fty (0.351679)
               

               
               ecc (0.345105)
               

               
               fhi (0.339155)
               

               
               nca (0.273748)
               

               
               ute (0.265569)
               

               
               ese (0.253004)
               

               
               cly (0.241284)
               

               
               pan (0.23596)
               

               
               ece (0.229305)
               

               
               fbs (0.175346)
               

               
               duo (0.172801)
               

               
               eye (0.170503)
               

               
               cut (0.169924)
               

               
               nje (0.16592)
               

               
               cje (0.165235)
               

               
               csp (0.161186)
               

               
               cag (0.151194)
               

               
               fat (0.147427)
               

               
               csk (0.140746)
               

               
               ssp (0.13552)
               

               
               nmm (0.132802)
               

               
               kid (0.129735)
               

               
               eep (0.122564)
               

               
               eru (0.120048)
               

               
               pgl (0.118483)
               

               
               jej (0.0989218)

	12-251, gnl\|bosTau2\|chr7 (10887489-10887252)
	12-251, gnl\|Hg17\|chr1 (27660035-27660274)
	12-251, gnl\|Mm7\|chr1 (9925063-9924833)

	mcp (0.853242)
	clu (0.598229)
	col (0.585023)
	hyp (0.571347)
	lnt (0.569233)
	fce (0.543183)
	eje (0.494169)
	cbe (0.478469)
	amn (0.417711)
	elu (0.385356)
	nlu (0.383362)
	cmu (0.372787)
	ebs (0.354904)
	fty (0.351679)
	ecc (0.345105)
	fhi (0.339155)
	nca (0.273748)
	ute (0.265569)
	ese (0.253004)
	cly (0.241284)
	pan (0.23596)
	ece (0.229305)
	fbs (0.175346)
	duo (0.172801)
	eye (0.170503)
	cut (0.169924)
	nje (0.16592)
	cje (0.165235)
	csp (0.161186)
	cag (0.151194)
	fat (0.147427)
	csk (0.140746)
	ssp (0.13552)
	nmm (0.132802)
	kid (0.129735)
	eep (0.122564)
	eru (0.120048)
	pgl (0.118483)
	jej (0.0989218)