Non-Coding RNA Search

Ss1.1-reye1635b_e12.5

Sequence:


               
               GCGGGTAAGCATTCTTCTAAAAGGAGCTTCTGAATAATAGCAAAGGAAAAGAGCTGACTA
TTTTTATAGCATATTTAATATATTTGTATATAACTCAATACAGTAGGAACCCTTCGCACG
CCTCCTGCCCTGGAATCCAGGTCCCCTTTGCCATATAGCATTAGCATAGCCTCCGCACTG
GGGCTGCGGCCAGCCCCAGCCCCCAGCCAGTGCTGCTGCTCCTGAGACAGGTGAGAAGCC
CCGACTCTCATGCCCGGGGATCCTTCCTATAGGAATCGCACACACTTCGCAAACAGCACA
CCACAGTCTAAGAGCATCATTTTAAAAGGTAACAAGCACTTTATTGTAATTATTCATTTT
GATAAAGCTTATTATCTTAGATATTACCATTTCTGAAGGGTCCCCAAATCATCACTTAGA
TGAAAATTTTAAATGACATTTCTGAGAAATGTTTAGATCCAGTGAACCATAGTAGGTTTA
GAGGAGTGACTGCAAGGTAGCCAAATGAACTTGGACTTTTGTCTTGAATGTGAGGGAGTT
GAGACTGTAGATGCCTGGTTCTGTTCAGACACTATTGTAAACCTATGCTGCCTATCTATT
GTGTGGACACCAAAAGAGACCATTGAGCCTGTTTGTTTTCAAAGGTCTGGGAAAACTGCA
TCAGTGTGAATAGATGTGTACAACTATCCTAAAGTGGTTGGTAGTAAGATTTTAGAATAT
AATAATTTCAAGAATTACTCTGGGTGTTTTAAATGTGCGCTGAAATGTTGGCATGTCGTT
TCAGTGTTGCCATTTGAATTGCTCTTGTAACATTTTTGCACAAAAATGACTTTAGAAAGA
CTACTTTCGTTGAAAAAAACAGGAAAAAATTGGTCTTAACATCTCCTGTGGAAACACTGG
GGATGGATTTTGTTGGTATAGCTACTAATTCAGGATATTTAAAACAGTATTGAACAGCTC
ACAGAAATTAAGTAAACGTGGATCATGAAAAACTAAGTTTCTTTCCATGTGACTGGTTTG
CATACTTTTTTCCCCATGTCATAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGGGTAAGCATTCTTCTAAAAGGAGCTTCTGAATAATAGCAAAGGAAAAGAGCTGACTA
TTTTTATAGCATATTTAATATATTTGTATATAACTCAATACAGTAGGAACCCTTCGCACG
CCTCCTGCCCTGGAATCCAGGTCCCCTTTGCCATATAGCATTAGCATAGCCTCCGCACTG
GGGCTGCGGCCAGCCCCAGCCCCCAGCCAGTGCTGCTGCTCCTGAGACAGGTGAGAAGCC
CCGACTCTCATGCCCGGGGATCCTTCCTATAGGAATCGCACACACTTCGCAAACAGCACA
CCACAGTCTAAGAGCATCATTTTAAAAGGTAACAAGCACTTTATTGTAATTATTCATTTT
GATAAAGCTTATTATCTTAGATATTACCATTTCTGAAGGGTCCCCAAATCATCACTTAGA
TGAAAATTTTAAATGACATTTCTGAGAAATGTTTAGATCCAGTGAACCATAGTAGGTTTA
GAGGAGTGACTGCAAGGTAGCCAAATGAACTTGGACTTTTGTCTTGAATGTGAGGGAGTT
GAGACTGTAGATGCCTGGTTCTGTTCAGACACTATTGTAAACCTATGCTGCCTATCTATT
GTGTGGACACCAAAAGAGACCATTGAGCCTGTTTGTTTTCAAAGGTCTGGGAAAACTGCA
TCAGTGTGAATAGATGTGTACAACTATCCTAAAGTGGTTGGTAGTAAGATTTTAGAATAT
AATAATTTCAAGAATTACTCTGGGTGTTTTAAATGTGCGCTGAAATGTTGGCATGTCGTT
TCAGTGTTGCCATTTGAATTGCTCTTGTAACATTTTTGCACAAAAATGACTTTAGAAAGA
CTACTTTCGTTGAAAAAAACAGGAAAAAATTGGTCTTAACATCTCCTGTGGAAACACTGG
GGATGGATTTTGTTGGTATAGCTACTAATTCAGGATATTTAAAACAGTATTGAACAGCTC
ACAGAAATTAAGTAAACGTGGATCATGAAAAACTAAGTTTCTTTCCATGTGACTGGTTTG
CATACTTTTTTCCCCATGTCATAA

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

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               39-156, - strand, RNAz p=0.902849
               

               
               383-533, - strand, RNAz p=0.930153
               

               
               809-916, + strand, RNAz p=0.670329

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               39-156, - strand, RNAz p=0.902849
               

               
               383-533, - strand, RNAz p=0.930153
               

               
               809-916, + strand, RNAz p=0.670329

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               760-861, + strand, RNAmicro p=0.946976

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               760-861, + strand, RNAmicro p=0.946976

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1044, gnl|bosTau2|chr6 (39117582-39118634)
               

               
               1-1044, gnl|Hg17|chr4 (56138545-56137479)
               

               
               1-1044, gnl|Mm7|chr5 (76145525-76144476)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1044, gnl|bosTau2|chr6 (39117582-39118634)
               

               
               1-1044, gnl|Hg17|chr4 (56138545-56137479)
               

               
               1-1044, gnl|Mm7|chr5 (76145525-76144476)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               hea (0.204499)
               

               
               eye (0.170503)
               

               
               sug (0.127291)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hea (0.204499)
               

               
               eye (0.170503)
               

               
               sug (0.127291)

	39-156, - strand, RNAz p=0.902849
	383-533, - strand, RNAz p=0.930153
	809-916, + strand, RNAz p=0.670329

	1-1044, gnl\|bosTau2\|chr6 (39117582-39118634)
	1-1044, gnl\|Hg17\|chr4 (56138545-56137479)
	1-1044, gnl\|Mm7\|chr5 (76145525-76144476)