Non-Coding RNA Search

Ss1.1-reye1635b_m20.5

Sequence:


               
               ACATAGAATATTATATGAAGTTGGTACATAATTCTGATGAGGAAAAAAAAAATCTTTGCA
ATTCTTTAAGCCATATTATTGTTATTCTCTCTTGTTTGCCTTGGATGAAAATATCAGTAT
TAAGTAGTCAGCATATTATTCAAGTGCTTATACTTATTAATATGTTCCTGTCCTGTATTT
ATACATATGTGTATTTTGGAAAGTATTGCCTTTTTGGAGGGAAGCTATTATTAGATACTT
AGTGAAAAAGGGAATGGGAAGCTCTTTGAGCCTCTTCAGCTGAGGATAACACAGCACTAT
AATCCATTCTCTTGCACCTTCTTATTATTATCTTGTTATTATGGTTATTAATCTTGTGGG
GGGGCAGGAGTGAGCTAGGGGAACAGGGGGCATGTGACTGATTAGCCCCTCTATGGTTGG
CCAGCTCCAAAGATGGCCTCCTTGGCCTGATCCAGGGCTTCCGGTCAGAACAGCCCAAAG
AGGGAAGAGGAAGACAGACTTCACACCGTTCCTTTTGGAGCTTTGCCATCTGAGCCATGT
CCCAGGTCCCCATGCTCTTTGAACTTGGATTTGTCCCCCTGCCCTCCACCATCTAATGGA
CTTGAATCTACTCGAAATGAATATTTAACCCAGCATCACTACATCACAGCCCAGAGCGAC
AGCTAACCCTGAAATCTGGGAGGCGTCCAGCCTTGGGGAATTCATCGCTCTCTGTTGCCA
ACCTCACTCGACGTCCTCCACTCGCATGTGGTGACCCTGTCCATGTCTGTATCTGTTAAT
ATGTGTGTGTCCAGCTAGAAAGACAAACAGAACCCGTGGGCCAGCTCGGAGGGTGCGTGG
AGGAGGCTCCCGACCGCTCCCGAGGGCCGCCCTCGGGATGGCATTCCGTTGTGTGCCTTA
TTCCTGGAGAATCTGTATACGGCCTGCCTATAGAAATATAGCCTTTTCATGCTGTATTAA
AAGGACTCTTAAAAGCAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACATAGAATATTATATGAAGTTGGTACATAATTCTGATGAGGAAAAAAAAAATCTTTGCA
ATTCTTTAAGCCATATTATTGTTATTCTCTCTTGTTTGCCTTGGATGAAAATATCAGTAT
TAAGTAGTCAGCATATTATTCAAGTGCTTATACTTATTAATATGTTCCTGTCCTGTATTT
ATACATATGTGTATTTTGGAAAGTATTGCCTTTTTGGAGGGAAGCTATTATTAGATACTT
AGTGAAAAAGGGAATGGGAAGCTCTTTGAGCCTCTTCAGCTGAGGATAACACAGCACTAT
AATCCATTCTCTTGCACCTTCTTATTATTATCTTGTTATTATGGTTATTAATCTTGTGGG
GGGGCAGGAGTGAGCTAGGGGAACAGGGGGCATGTGACTGATTAGCCCCTCTATGGTTGG
CCAGCTCCAAAGATGGCCTCCTTGGCCTGATCCAGGGCTTCCGGTCAGAACAGCCCAAAG
AGGGAAGAGGAAGACAGACTTCACACCGTTCCTTTTGGAGCTTTGCCATCTGAGCCATGT
CCCAGGTCCCCATGCTCTTTGAACTTGGATTTGTCCCCCTGCCCTCCACCATCTAATGGA
CTTGAATCTACTCGAAATGAATATTTAACCCAGCATCACTACATCACAGCCCAGAGCGAC
AGCTAACCCTGAAATCTGGGAGGCGTCCAGCCTTGGGGAATTCATCGCTCTCTGTTGCCA
ACCTCACTCGACGTCCTCCACTCGCATGTGGTGACCCTGTCCATGTCTGTATCTGTTAAT
ATGTGTGTGTCCAGCTAGAAAGACAAACAGAACCCGTGGGCCAGCTCGGAGGGTGCGTGG
AGGAGGCTCCCGACCGCTCCCGAGGGCCGCCCTCGGGATGGCATTCCGTTGTGTGCCTTA
TTCCTGGAGAATCTGTATACGGCCTGCCTATAGAAATATAGCCTTTTCATGCTGTATTAA
AAGGACTCTTAAAAGCAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               394-541, - strand, RNAz p=0.961608

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               394-541, - strand, RNAz p=0.961608

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-978, gnl|bosTau2|chr28 (27919007-27918007)
               

               
               1-978, gnl|Hg17|chr10 (80813117-80812089)
               

               
               1-978, gnl|Mm7|chr14 (23383775-23382830)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-978, gnl|bosTau2|chr28 (27919007-27918007)
               

               
               1-978, gnl|Hg17|chr10 (80813117-80812089)
               

               
               1-978, gnl|Mm7|chr14 (23383775-23382830)

Expressed library(ies): 13 entry(ies)

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Expressed library(ies): 13 entry(ies)

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               fbs (0.526039)
               

               
               eye (0.341006)
               

               
               pty (0.285429)
               

               
               eep (0.245128)
               

               
               fcc (0.197785)
               

               
               hlv (0.139256)
               

               
               ssp (0.13552)
               

               
               nmm (0.132802)
               

               
               ese (0.126502)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)
               

               
               jca (0.11396)
               

               
               ldo (0.0970026)

Expressed library(ies): 13 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fbs (0.526039)
               

               
               eye (0.341006)
               

               
               pty (0.285429)
               

               
               eep (0.245128)
               

               
               fcc (0.197785)
               

               
               hlv (0.139256)
               

               
               ssp (0.13552)
               

               
               nmm (0.132802)
               

               
               ese (0.126502)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)
               

               
               jca (0.11396)
               

               
               ldo (0.0970026)

	1-978, gnl\|bosTau2\|chr28 (27919007-27918007)
	1-978, gnl\|Hg17\|chr10 (80813117-80812089)
	1-978, gnl\|Mm7\|chr14 (23383775-23382830)

	fbs (0.526039)
	eye (0.341006)
	pty (0.285429)
	eep (0.245128)
	fcc (0.197785)
	hlv (0.139256)
	ssp (0.13552)
	nmm (0.132802)
	ese (0.126502)
	eru (0.120048)
	ebs (0.118301)
	jca (0.11396)
	ldo (0.0970026)