Non-Coding RNA Search

Ss1.1-reye1638b_f2.5

Sequence:


               
               TGTACATGCAAAGATTGGACCATGTTACATGAAATAGTGCCAGCTGGAGGTTCTTTGCCA
GCACCATGCCAAGTGAAATAATATATTTACTCTCTCTATTATACACCAGTGTGTGCCTGC
AGCAGCCTCCACAGCCACGATGGGTTTGTTTTTGTTTTGTCGGGTGGGGAGCAGGGACGG
GCGGAGGGAGGAGAGAGCAGGTTTCAGATCCTTATTTGCCGAGCCGTTTGTTTAGGTAGA
GAAGACAAGTCCAAAGAGTGTGTGGGCTTTCCTGTTTCTAAACCTTCACTACTATAAAAC
CAAAAAGAGGAAATCGAGATTTAACCAACCCCAGTGCCCAGAGGAGGGATGGGGAGGGAA
GGGGAGGGAGCCGGGGTGGGAAGAGTATATCGAATAAGCAGTATTTCATATTGTCTGGGG
TGGGGGCGGCGCACGGAGAGACGGAGCCGAGAACAGCCGCCGGCTTCTCCGGAGCAGTCT
GCTCCCCCGCCGTGGGCACCCCCACGCTCCCCACATTCCTTCCCTGCTTTGGCAAATGGG
CGCCATCCCCGTGGATGATCCGGTTAACCTTCCCTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGTACATGCAAAGATTGGACCATGTTACATGAAATAGTGCCAGCTGGAGGTTCTTTGCCA
GCACCATGCCAAGTGAAATAATATATTTACTCTCTCTATTATACACCAGTGTGTGCCTGC
AGCAGCCTCCACAGCCACGATGGGTTTGTTTTTGTTTTGTCGGGTGGGGAGCAGGGACGG
GCGGAGGGAGGAGAGAGCAGGTTTCAGATCCTTATTTGCCGAGCCGTTTGTTTAGGTAGA
GAAGACAAGTCCAAAGAGTGTGTGGGCTTTCCTGTTTCTAAACCTTCACTACTATAAAAC
CAAAAAGAGGAAATCGAGATTTAACCAACCCCAGTGCCCAGAGGAGGGATGGGGAGGGAA
GGGGAGGGAGCCGGGGTGGGAAGAGTATATCGAATAAGCAGTATTTCATATTGTCTGGGG
TGGGGGCGGCGCACGGAGAGACGGAGCCGAGAACAGCCGCCGGCTTCTCCGGAGCAGTCT
GCTCCCCCGCCGTGGGCACCCCCACGCTCCCCACATTCCTTCCCTGCTTTGGCAAATGGG
CGCCATCCCCGTGGATGATCCGGTTAACCTTCCCTC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               307-411, + strand, RNAz p=0.965374

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               307-411, + strand, RNAz p=0.965374

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of BC015714, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of BC015714, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-576, gnl|bosTau2|chr15 (47750025-47749454)
               

               
               1-576, gnl|Hg17|chr11 (45911908-45911328)
               

               
               1-576, gnl|Mm7|chr2 (92211314-92211839)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-576, gnl|bosTau2|chr15 (47750025-47749454)
               

               
               1-576, gnl|Hg17|chr11 (45911908-45911328)
               

               
               1-576, gnl|Mm7|chr2 (92211314-92211839)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               eye (0.170503)
               

               
               cty (0.10408)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eye (0.170503)
               

               
               cty (0.10408)

	1-576, gnl\|bosTau2\|chr15 (47750025-47749454)
	1-576, gnl\|Hg17\|chr11 (45911908-45911328)
	1-576, gnl\|Mm7\|chr2 (92211314-92211839)