Non-Coding RNA Search

Ss1.1-rfat0101_i22.5

Sequence:


               
               TTCACATGCACTGACCTTTTGAGAGCCAAGCTAAAACCTTGGTTTTGCAAGTGATCAGCA
TCCTAGTTTGCCTGGGACAACCTGGGTTTATACCTGTTGTCCCTAGGTGGTTACTAAGAG
TGTCACCTTAACGCTTAAAAGTGTTCCAGTCTGGGTGGTAAATTATATGGACACCCTGTG
TATAAGTGCAGTGCTCAAGGAAGGCATGGCCAGCCTTGCCCAAGGAGCAAATTTTCCAGC
GTGCAAGCCTGAGAGAGCAGCCTTGAGGCCATCCTCAACAAGTAAGAGATGACGCCAACC
AGGATCATCAGCACCCCAAGGGCCAGGATAGCTTGACCTTCAGCACATTGCAACACTCTG
AACACAGGTCACTACCAAATGCTTTCCAGGCTTTTGACCACTCTCTTTGAACCAACCAAC
CCAGCCAAGCGGCATATTTCTCTTTTAACCTTTTTATTCAGGTAGCGCCCTCTTGTTGCC
TTTCAACTCATTCTCTCTTTTTAAGAATTTGACTGCCCACCGGCTGTGAGACTGAGGCTG
ACCTTCCACAGCTCTGCAAGGGTAACTGGTATATTTGTATATGAGTAGTTGCATGAAACA
GCCCAATGTGCATACTGTATTTATTAAGCCCTGAAGGCATTTAATAAAATATTAACATCG
TGTTTTGAATTATGATCTTTGTCTGCTTTGCTGGAACAAAATGTAACAGAGCTAACATTT
AAAATCCTTCACATATTTGGACAATATGACACCAAATGTTGATTTTGTACAGAATCCTGC
CTTGCTATTTAAAACTAAAATTCCAAATATGTAGCAACCCAAGTTGTGAATATTGCTTTC
TGCTTCAATGAGAAAGTAGTTTACCTAAAAAATGGCATGTAACCTATATTTTGTTAATTT
AAGCAAATAAAGACATGTTGAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTCACATGCACTGACCTTTTGAGAGCCAAGCTAAAACCTTGGTTTTGCAAGTGATCAGCA
TCCTAGTTTGCCTGGGACAACCTGGGTTTATACCTGTTGTCCCTAGGTGGTTACTAAGAG
TGTCACCTTAACGCTTAAAAGTGTTCCAGTCTGGGTGGTAAATTATATGGACACCCTGTG
TATAAGTGCAGTGCTCAAGGAAGGCATGGCCAGCCTTGCCCAAGGAGCAAATTTTCCAGC
GTGCAAGCCTGAGAGAGCAGCCTTGAGGCCATCCTCAACAAGTAAGAGATGACGCCAACC
AGGATCATCAGCACCCCAAGGGCCAGGATAGCTTGACCTTCAGCACATTGCAACACTCTG
AACACAGGTCACTACCAAATGCTTTCCAGGCTTTTGACCACTCTCTTTGAACCAACCAAC
CCAGCCAAGCGGCATATTTCTCTTTTAACCTTTTTATTCAGGTAGCGCCCTCTTGTTGCC
TTTCAACTCATTCTCTCTTTTTAAGAATTTGACTGCCCACCGGCTGTGAGACTGAGGCTG
ACCTTCCACAGCTCTGCAAGGGTAACTGGTATATTTGTATATGAGTAGTTGCATGAAACA
GCCCAATGTGCATACTGTATTTATTAAGCCCTGAAGGCATTTAATAAAATATTAACATCG
TGTTTTGAATTATGATCTTTGTCTGCTTTGCTGGAACAAAATGTAACAGAGCTAACATTT
AAAATCCTTCACATATTTGGACAATATGACACCAAATGTTGATTTTGTACAGAATCCTGC
CTTGCTATTTAAAACTAAAATTCCAAATATGTAGCAACCCAAGTTGTGAATATTGCTTTC
TGCTTCAATGAGAAAGTAGTTTACCTAAAAAATGGCATGTAACCTATATTTTGTTAATTT
AAGCAAATAAAGACATGTTGAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               4-110, - strand, RNAz p=0.778501
               

               
               720-837, - strand, RNAz p=0.525025

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               4-110, - strand, RNAz p=0.778501
               

               
               720-837, - strand, RNAz p=0.525025

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-928, gnl|bosTau2|chr20 (6640551-6639603)
               

               
               1-928, gnl|Hg17|chr5 (71772423-71771485)
               

               
               1-928, gnl|Mm7|chr13 (96319310-96320456)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-928, gnl|bosTau2|chr20 (6640551-6639603)
               

               
               1-928, gnl|Hg17|chr5 (71772423-71771485)
               

               
               1-928, gnl|Mm7|chr13 (96319310-96320456)

Expressed library(ies): 10 entry(ies)

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Expressed library(ies): 10 entry(ies)

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               bfe (0.299715)
               

               
               fat (0.294855)
               

               
               eye (0.170503)
               

               
               fco (0.157208)
               

               
               tbr (0.154178)
               

               
               isp (0.150376)
               

               
               liv (0.146284)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               thg (0.126791)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               bfe (0.299715)
               

               
               fat (0.294855)
               

               
               eye (0.170503)
               

               
               fco (0.157208)
               

               
               tbr (0.154178)
               

               
               isp (0.150376)
               

               
               liv (0.146284)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               thg (0.126791)

	4-110, - strand, RNAz p=0.778501
	720-837, - strand, RNAz p=0.525025

	1-928, gnl\|bosTau2\|chr20 (6640551-6639603)
	1-928, gnl\|Hg17\|chr5 (71772423-71771485)
	1-928, gnl\|Mm7\|chr13 (96319310-96320456)

	bfe (0.299715)
	fat (0.294855)
	eye (0.170503)
	fco (0.157208)
	tbr (0.154178)
	isp (0.150376)
	liv (0.146284)
	ova (0.129132)
	sug (0.127291)
	thg (0.126791)