Ss1.1-rfat0102_d8.5
|
GAAGAGATGCTGGAAAGCGGAAATCCCTCCATTTTCACGTCCGATATTATATCAGATTCA
CAGATTACTAGACAGGCTCTCAATGAAATTGAGTCTCGTCATAAAGACATCATGAAACTG
GAGACCAGCATCCGTGAGCTGCACGAGATGTTTATGGACATGGCTATGTTTGTGGAGACT
CAGGGTGAAATGATCAATAACATAGAAAAAAATGTTATGAATGCCGCAGACTATGTAGAA
CATGCTAAAGAAGAAACGAAAAAACAGTGTGTGCGCCACAGCAAAGCACGGAGGAAAATG
ATGTTCATTATTATTTGTGTAATTATTTTGCTTGTGATCCTTGGAATTATCCTAGCAACA
ACACTTTCATAGCAACTGTATCCCTGGAGCCGTTGGTCCTTGGAGTTAGACCATGTCTGC
AGCAGTTCTGCATCCTTCTATTTCCTGAGTGGACCCCAGACATTGTGACGTGTGGCACTG
AGTGCCGATTTTTTATTAGTGAATTCAAGAAGAAAACACAACAGAATGCGTTGTTGGGTG
AAAAAACCGTAAGCAGAATGGAAGTGATCAGTTAACCCAAACATCCTTGGAGTCTAAATA
ATACACCACAAAATTTAACAATGTGAAACTTGTTTCAGTGGCCTTAGGATAAGGAATTAT
TGAAATTTTCAATTTTTTTTTTTTTTTTTACATTTCAGTGTTAAAATGTATATGAAGTTT
AATTAGGAATATCTTATGTTATGAAGCTATTGGATTTCAGGTCTAAGCCTTTCTTCCCTC
TTCCAGCTAACATGCTAAGAGACATTTTTGTATTATGTTTAATTCATATTTGTTTATGTT
TGTAAAGAATTATTTTTATTATCACAGAGCTGTTTTGTAAGATACCTATAATTTTAAATG
TTTATAAATTGTTTAATATATTAACACCTTAATTTACTCCAATTTTATTAACTATTGCCT
TTTGAAAGAAATAGGAAGCTTCATGATCTTAGAGCCATCGTTGCACAGTTGTTTACAAAA
TTTGCCATGGGCATAGAAAACATTGGTTGCAGAGTACCCCAAAAAGCCTTTCCAGGGCCT
TCTGTAAAAATTGATTTATAAGGTTTAAATGCGCCTGACACCTCCAGGAAAATCTTGATT
CTTGTACTTATCTACATTACTACCTGTTCTGTTACCCCAGATAATAAATTAGTTATTACA |
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GAAGAGATGCTGGAAAGCGGAAATCCCTCCATTTTCACGTCCGATATTATATCAGATTCA
CAGATTACTAGACAGGCTCTCAATGAAATTGAGTCTCGTCATAAAGACATCATGAAACTG
GAGACCAGCATCCGTGAGCTGCACGAGATGTTTATGGACATGGCTATGTTTGTGGAGACT
CAGGGTGAAATGATCAATAACATAGAAAAAAATGTTATGAATGCCGCAGACTATGTAGAA
CATGCTAAAGAAGAAACGAAAAAACAGTGTGTGCGCCACAGCAAAGCACGGAGGAAAATG
ATGTTCATTATTATTTGTGTAATTATTTTGCTTGTGATCCTTGGAATTATCCTAGCAACA
ACACTTTCATAGCAACTGTATCCCTGGAGCCGTTGGTCCTTGGAGTTAGACCATGTCTGC
AGCAGTTCTGCATCCTTCTATTTCCTGAGTGGACCCCAGACATTGTGACGTGTGGCACTG
AGTGCCGATTTTTTATTAGTGAATTCAAGAAGAAAACACAACAGAATGCGTTGTTGGGTG
AAAAAACCGTAAGCAGAATGGAAGTGATCAGTTAACCCAAACATCCTTGGAGTCTAAATA
ATACACCACAAAATTTAACAATGTGAAACTTGTTTCAGTGGCCTTAGGATAAGGAATTAT
TGAAATTTTCAATTTTTTTTTTTTTTTTTACATTTCAGTGTTAAAATGTATATGAAGTTT
AATTAGGAATATCTTATGTTATGAAGCTATTGGATTTCAGGTCTAAGCCTTTCTTCCCTC
TTCCAGCTAACATGCTAAGAGACATTTTTGTATTATGTTTAATTCATATTTGTTTATGTT
TGTAAAGAATTATTTTTATTATCACAGAGCTGTTTTGTAAGATACCTATAATTTTAAATG
TTTATAAATTGTTTAATATATTAACACCTTAATTTACTCCAATTTTATTAACTATTGCCT
TTTGAAAGAAATAGGAAGCTTCATGATCTTAGAGCCATCGTTGCACAGTTGTTTACAAAA
TTTGCCATGGGCATAGAAAACATTGGTTGCAGAGTACCCCAAAAAGCCTTTCCAGGGCCT
TCTGTAAAAATTGATTTATAAGGTTTAAATGCGCCTGACACCTCCAGGAAAATCTTGATT
CTTGTACTTATCTACATTACTACCTGTTCTGTTACCCCAGATAATAAATTAGTTATTACA |
|
gi|61863926|ref|XP_597361.1| |
Protein identifier
|
gi|61863926|ref|XP_597361.1| |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
46-184, gnl|bosTau2|chr17 (23989404-23989266) |
|
46-184, gnl|canFam2|chr26 (4478271-4478130) |
|
46-184, gnl|danRer3|chr8 (37809012-37808873) |
|
46-184, gnl|dasNov1|scaffold_44485 (4637-4768) |
|
46-184, gnl|echTel1|scaffold_178852 (7506-7378) |
|
46-184, gnl|fr1|chrUn (140269806-140269946) |
|
46-184, gnl|galGal2|chr15 (3175684-3175562) |
|
46-184, gnl|hg17|chr12 (129810558-129810698) |
|
46-184, gnl|Hg17|chr12 (129810715-129810577) |
|
46-184, gnl|loxAfr1|scaffold_9927 (31622-31482) |
|
46-184, gnl|mm7|chr5 (128229076-128229207) |
|
46-184, gnl|Mm7|chr5 (128229224-128229086) |
|
46-184, gnl|monDom2|scaffold_54 (6568431-6568282) |
|
46-184, gnl|oryCun1|scaffold_121052 (1695-1555) |
|
46-184, gnl|panTro1|chr10 (132970781-132970921) |
|
46-184, gnl|rheMac2|chr11 (132085913-132086053) |
|
46-184, gnl|rn3|chr12 (28633369-28633238) |
|
46-184, gnl|tetNig1|chr1 (7065549-7065427) |
|
46-184, gnl|xenTro1|scaffold_717 (165293-165167) |
| |
|
294-1200, gnl|bosTau2|chr17 (23981006-23980100) |
|
294-1200, gnl|Hg17|chr12 (129801403-129800237) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
46-184, gnl|bosTau2|chr17 (23989404-23989266) |
|
46-184, gnl|canFam2|chr26 (4478271-4478130) |
|
46-184, gnl|danRer3|chr8 (37809012-37808873) |
|
46-184, gnl|dasNov1|scaffold_44485 (4637-4768) |
|
46-184, gnl|echTel1|scaffold_178852 (7506-7378) |
|
46-184, gnl|fr1|chrUn (140269806-140269946) |
|
46-184, gnl|galGal2|chr15 (3175684-3175562) |
|
46-184, gnl|hg17|chr12 (129810558-129810698) |
|
46-184, gnl|Hg17|chr12 (129810715-129810577) |
|
46-184, gnl|loxAfr1|scaffold_9927 (31622-31482) |
|
46-184, gnl|mm7|chr5 (128229076-128229207) |
|
46-184, gnl|Mm7|chr5 (128229224-128229086) |
|
46-184, gnl|monDom2|scaffold_54 (6568431-6568282) |
|
46-184, gnl|oryCun1|scaffold_121052 (1695-1555) |
|
46-184, gnl|panTro1|chr10 (132970781-132970921) |
|
46-184, gnl|rheMac2|chr11 (132085913-132086053) |
|
46-184, gnl|rn3|chr12 (28633369-28633238) |
|
46-184, gnl|tetNig1|chr1 (7065549-7065427) |
|
46-184, gnl|xenTro1|scaffold_717 (165293-165167) |
| |
|
294-1200, gnl|bosTau2|chr17 (23981006-23980100) |
|
294-1200, gnl|Hg17|chr12 (129801403-129800237) |
|
sag (0.182715) |
|
rec (0.17307) |
|
fco (0.157208) |
|
fat (0.147427) |
|
hyp (0.142837) |
|
ebs (0.118301) |
|
spc (0.113366) |
|
sag (0.182715) |
|
rec (0.17307) |
|
fco (0.157208) |
|
fat (0.147427) |
|
hyp (0.142837) |
|
ebs (0.118301) |
|
spc (0.113366) |
