Non-Coding RNA Search

Ss1.1-rfat0102_f12.5

Sequence:


               
               GGGAGAACGAGCGCGTCTACAGGTGCATCATCTGCACCTATACCACGGTGAGCGAGTACC
ACTGGCGGAAACACCTGAGGAACCATTTTCCACGGAAGGTGTACACGTGCGGAAAGTGCA
ACTACTTTTCAGACCGAAAGAACAACTATGTTCAGCACGTGCGAACTCACACAGGAGAAC
GTCCGTATAAATGTGAACTTTGTCCTTACTCAAGTTCTCAGAAGACTCACCTAACCAGAC
ACATGCGTACTCACTCAGGTGAGAAGCCATTTAAGTGCGACCAGTGCAGTTACGTGGCCT
CTAATCAACACGAAGTAACCCGCCACGCGAGACAGGTGCACAACGGGCCTAAACCGCTGA
GCTGCCCGCACTGTGACTACAAGACAGCAGACAGAAGTAACTTCAAGAAGCACGTCGAGC
TGCATGTCAATCCACGGCAGTTCAACTGCCCGGTGTGCGACTACGCAGCTTCCAAGAAGT
GTAATCTGCAGTATCATTTCAAGTCGAAGCATCCCACCTGCCCCAGTAAAACGATGGATG
TCTCAAAGGTGAAACTGAAGAAAACCAAAAAGCGAGAGGCCGACTTGCCTGATGACAAAA
TCACCAGCGAGAAAACAGAAACGGAGCAGGCAAAAATAAAGGGGGACGTGGCTGGGAAGA
AAAACGAGAAGTCTGTAAGAGTGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGAGAACGAGCGCGTCTACAGGTGCATCATCTGCACCTATACCACGGTGAGCGAGTACC
ACTGGCGGAAACACCTGAGGAACCATTTTCCACGGAAGGTGTACACGTGCGGAAAGTGCA
ACTACTTTTCAGACCGAAAGAACAACTATGTTCAGCACGTGCGAACTCACACAGGAGAAC
GTCCGTATAAATGTGAACTTTGTCCTTACTCAAGTTCTCAGAAGACTCACCTAACCAGAC
ACATGCGTACTCACTCAGGTGAGAAGCCATTTAAGTGCGACCAGTGCAGTTACGTGGCCT
CTAATCAACACGAAGTAACCCGCCACGCGAGACAGGTGCACAACGGGCCTAAACCGCTGA
GCTGCCCGCACTGTGACTACAAGACAGCAGACAGAAGTAACTTCAAGAAGCACGTCGAGC
TGCATGTCAATCCACGGCAGTTCAACTGCCCGGTGTGCGACTACGCAGCTTCCAAGAAGT
GTAATCTGCAGTATCATTTCAAGTCGAAGCATCCCACCTGCCCCAGTAAAACGATGGATG
TCTCAAAGGTGAAACTGAAGAAAACCAAAAAGCGAGAGGCCGACTTGCCTGATGACAAAA
TCACCAGCGAGAAAACAGAAACGGAGCAGGCAAAAATAAAGGGGGACGTGGCTGGGAAGA
AAAACGAGAAGTCTGTAAGAGTGG

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               57-175, + strand, RNAz p=0.550128
               

               
               334-493, - strand, RNAz p=0.952212

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               57-175, + strand, RNAz p=0.550128
               

               
               334-493, - strand, RNAz p=0.952212

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               472-596, - strand, RNAmicro p=0.999582

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               472-596, - strand, RNAmicro p=0.999582

Aligned organism(s): 21 entry(ies)

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Aligned organism(s): 21 entry(ies)

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               1-175, gnl|bosTau2|chr6 (39420530-39420356)
               

               
               1-175, gnl|canFam2|chr13 (51974112-51974385)
               

               
               1-175, gnl|danRer3|chrNA (28169649-28169919)
               

               
               1-175, gnl|dasNov1|scaffold_62535 (289-16)
               

               
               1-175, gnl|fr1|chrUn (275650548-275650184)
               

               
               1-175, gnl|galGal2|chr4 (49784330-49784057)
               

               
               1-175, gnl|hg17|chr4 (57618363-57618636)
               

               
               1-175, gnl|Hg17|chr4 (57618457-57618631)
               

               
               1-175, gnl|loxAfr1|scaffold_2805 (69335-69062)
               

               
               1-175, gnl|mm7|chr5 (77199885-77200158)
               

               
               1-175, gnl|Mm7|chr5 (77199979-77200153)
               

               
               1-175, gnl|monDom2|scaffold_26 (20796967-20797240)
               

               
               1-175, gnl|oryCun1|scaffold_172754 (5544-5271)
               

               
               1-175, gnl|panTro1|chr3 (89007306-89007033)
               

               
               1-175, gnl|rheMac2|chr5 (72465186-72464913)
               

               
               1-175, gnl|rn3|chr14 (33150517-33150244)
               

               
               1-175, gnl|tetNig1|chrUn_random (47520715-47520345)
               

               
               1-175, gnl|xenTro1|scaffold_157 (18104-17831)
               


               
               255-684, gnl|bosTau2|chr6 (39408810-39408381)
               

               
               255-684, gnl|Hg17|chr4 (57636931-57637357)
               

               
               255-684, gnl|Mm7|chr5 (77212028-77212457)

Aligned organism(s): 21 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-175, gnl|bosTau2|chr6 (39420530-39420356)
               

               
               1-175, gnl|canFam2|chr13 (51974112-51974385)
               

               
               1-175, gnl|danRer3|chrNA (28169649-28169919)
               

               
               1-175, gnl|dasNov1|scaffold_62535 (289-16)
               

               
               1-175, gnl|fr1|chrUn (275650548-275650184)
               

               
               1-175, gnl|galGal2|chr4 (49784330-49784057)
               

               
               1-175, gnl|hg17|chr4 (57618363-57618636)
               

               
               1-175, gnl|Hg17|chr4 (57618457-57618631)
               

               
               1-175, gnl|loxAfr1|scaffold_2805 (69335-69062)
               

               
               1-175, gnl|mm7|chr5 (77199885-77200158)
               

               
               1-175, gnl|Mm7|chr5 (77199979-77200153)
               

               
               1-175, gnl|monDom2|scaffold_26 (20796967-20797240)
               

               
               1-175, gnl|oryCun1|scaffold_172754 (5544-5271)
               

               
               1-175, gnl|panTro1|chr3 (89007306-89007033)
               

               
               1-175, gnl|rheMac2|chr5 (72465186-72464913)
               

               
               1-175, gnl|rn3|chr14 (33150517-33150244)
               

               
               1-175, gnl|tetNig1|chrUn_random (47520715-47520345)
               

               
               1-175, gnl|xenTro1|scaffold_157 (18104-17831)
               


               
               255-684, gnl|bosTau2|chr6 (39408810-39408381)
               

               
               255-684, gnl|Hg17|chr4 (57636931-57637357)
               

               
               255-684, gnl|Mm7|chr5 (77212028-77212457)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               nco (0.161734)
               

               
               fat (0.147427)
               

               
               nmm (0.132802)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nco (0.161734)
               

               
               fat (0.147427)
               

               
               nmm (0.132802)

	57-175, + strand, RNAz p=0.550128
	334-493, - strand, RNAz p=0.952212

	1-175, gnl\|bosTau2\|chr6 (39420530-39420356)
	1-175, gnl\|canFam2\|chr13 (51974112-51974385)
	1-175, gnl\|danRer3\|chrNA (28169649-28169919)
	1-175, gnl\|dasNov1\|scaffold_62535 (289-16)
	1-175, gnl\|fr1\|chrUn (275650548-275650184)
	1-175, gnl\|galGal2\|chr4 (49784330-49784057)
	1-175, gnl\|hg17\|chr4 (57618363-57618636)
	1-175, gnl\|Hg17\|chr4 (57618457-57618631)
	1-175, gnl\|loxAfr1\|scaffold_2805 (69335-69062)
	1-175, gnl\|mm7\|chr5 (77199885-77200158)
	1-175, gnl\|Mm7\|chr5 (77199979-77200153)
	1-175, gnl\|monDom2\|scaffold_26 (20796967-20797240)
	1-175, gnl\|oryCun1\|scaffold_172754 (5544-5271)
	1-175, gnl\|panTro1\|chr3 (89007306-89007033)
	1-175, gnl\|rheMac2\|chr5 (72465186-72464913)
	1-175, gnl\|rn3\|chr14 (33150517-33150244)
	1-175, gnl\|tetNig1\|chrUn_random (47520715-47520345)
	1-175, gnl\|xenTro1\|scaffold_157 (18104-17831)

	255-684, gnl\|bosTau2\|chr6 (39408810-39408381)
	255-684, gnl\|Hg17\|chr4 (57636931-57637357)
	255-684, gnl\|Mm7\|chr5 (77212028-77212457)