Non-Coding RNA Search

Ss1.1-rfat0102_o5.5

Sequence:


               
               TTTTAAAAAAAATTGTTTTGCTGTATTATATAGGAAAAAAAATGTTTAAAATCCTGTAAT
TTAGAACAGTGAAAAGTGTCTTTGGAGAGTTAACTGACTTTTTACATTATCATAGAAACA
AGATTACCCTGTGTTTACAGATTGAGTCCTGTGGTGAGGCCATTTTTACAGAAGAGTTAG
TTATTTAATATAATGCTCTCTTAGTCTCTGTTTTTTAAGTTGTCCTTAATGTCCAGGCCC
TTTCCAAGAAAAAAAAAAAGGGGGGTGAATTTTGTTTCGGGTGGTCTCTTTTCTTTAATG
GGCAGTGCTGTTCTTTGTGCTGCCTGTCCTTCTCTTCCGATGGCGTTGTTAACACAGGTT
GAAATGTGTCATCTGTCATCTCTGCCTCATTTCTGGGGGTTCTGAATCAGAGTTCTCTAT
AACACTGGTTCCTGAGAACTAAAGGTCTTTTGATTCTTATTGTCTAATCCCAGGGCATTT
ATTTCCTTTGTCATAAACACTTGGTGTCCCAAGTGGTGAGTTAGAGTTGATTTTTTTTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTAAAAAAAATTGTTTTGCTGTATTATATAGGAAAAAAAATGTTTAAAATCCTGTAAT
TTAGAACAGTGAAAAGTGTCTTTGGAGAGTTAACTGACTTTTTACATTATCATAGAAACA
AGATTACCCTGTGTTTACAGATTGAGTCCTGTGGTGAGGCCATTTTTACAGAAGAGTTAG
TTATTTAATATAATGCTCTCTTAGTCTCTGTTTTTTAAGTTGTCCTTAATGTCCAGGCCC
TTTCCAAGAAAAAAAAAAAGGGGGGTGAATTTTGTTTCGGGTGGTCTCTTTTCTTTAATG
GGCAGTGCTGTTCTTTGTGCTGCCTGTCCTTCTCTTCCGATGGCGTTGTTAACACAGGTT
GAAATGTGTCATCTGTCATCTCTGCCTCATTTCTGGGGGTTCTGAATCAGAGTTCTCTAT
AACACTGGTTCCTGAGAACTAAAGGTCTTTTGATTCTTATTGTCTAATCCCAGGGCATTT
ATTTCCTTTGTCATAAACACTTGGTGTCCCAAGTGGTGAGTTAGAGTTGATTTTTTTTTT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               418-540, - strand, RNAz p=0.800968

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               418-540, - strand, RNAz p=0.800968

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               1-540, gnl|bosTau2|chr26 (21853469-21852928)
               

               
               1-540, gnl|canFam2|chr28 (28137613-28138339)
               

               
               1-540, gnl|dasNov1|scaffold_53991 (9564-10189)
               

               
               1-540, gnl|echTel1|scaffold_293962 (591-1070)
               

               
               1-540, gnl|hg17|chr10 (116044587-116045296)
               

               
               1-540, gnl|Hg17|chr10 (116045111-116044597)
               

               
               1-540, gnl|loxAfr1|scaffold_7617 (1047-394)
               

               
               1-540, gnl|mm7|chr19 (56828353-56828910)
               

               
               1-540, gnl|oryCun1|scaffold_174282 (8424-7764)
               

               
               1-540, gnl|panTro1|chr8 (118208520-118209208)
               

               
               1-540, gnl|rheMac2|chr9 (113951282-113951939)
               

               
               1-540, gnl|rn3|chr1 (263430368-263430941)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-540, gnl|bosTau2|chr26 (21853469-21852928)
               

               
               1-540, gnl|canFam2|chr28 (28137613-28138339)
               

               
               1-540, gnl|dasNov1|scaffold_53991 (9564-10189)
               

               
               1-540, gnl|echTel1|scaffold_293962 (591-1070)
               

               
               1-540, gnl|hg17|chr10 (116044587-116045296)
               

               
               1-540, gnl|Hg17|chr10 (116045111-116044597)
               

               
               1-540, gnl|loxAfr1|scaffold_7617 (1047-394)
               

               
               1-540, gnl|mm7|chr19 (56828353-56828910)
               

               
               1-540, gnl|oryCun1|scaffold_174282 (8424-7764)
               

               
               1-540, gnl|panTro1|chr8 (118208520-118209208)
               

               
               1-540, gnl|rheMac2|chr9 (113951282-113951939)
               

               
               1-540, gnl|rn3|chr1 (263430368-263430941)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               mas (0.210305)
               

               
               mcp (0.170648)
               

               
               fat (0.147427)
               

               
               csk (0.140746)
               

               
               cov (0.132153)
               

               
               kid (0.129735)
               

               
               jca (0.11396)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mas (0.210305)
               

               
               mcp (0.170648)
               

               
               fat (0.147427)
               

               
               csk (0.140746)
               

               
               cov (0.132153)
               

               
               kid (0.129735)
               

               
               jca (0.11396)

	1-540, gnl\|bosTau2\|chr26 (21853469-21852928)
	1-540, gnl\|canFam2\|chr28 (28137613-28138339)
	1-540, gnl\|dasNov1\|scaffold_53991 (9564-10189)
	1-540, gnl\|echTel1\|scaffold_293962 (591-1070)
	1-540, gnl\|hg17\|chr10 (116044587-116045296)
	1-540, gnl\|Hg17\|chr10 (116045111-116044597)
	1-540, gnl\|loxAfr1\|scaffold_7617 (1047-394)
	1-540, gnl\|mm7\|chr19 (56828353-56828910)
	1-540, gnl\|oryCun1\|scaffold_174282 (8424-7764)
	1-540, gnl\|panTro1\|chr8 (118208520-118209208)
	1-540, gnl\|rheMac2\|chr9 (113951282-113951939)
	1-540, gnl\|rn3\|chr1 (263430368-263430941)

	mas (0.210305)
	mcp (0.170648)
	fat (0.147427)
	csk (0.140746)
	cov (0.132153)
	kid (0.129735)
	jca (0.11396)