Non-Coding RNA Search

Ss1.1-rfat0103_h19.5

Sequence:


               
               TTTTTTTTTTTAATTTTATCTTTTTTAATACTTGGGACCCTTTCTACTAGGCCTGGAGGA
GTACAGCAGATTGAAAGCATTGCCCATTCTCTCTTCTACAGTAATACAGAGATGAAGCTG
ATTCACCAGGACTCACAGAAATGTACCGATTCAACTGGCAAAAGACATGAACACAAGAAA
ACTTTTCCACTAAACTTAAAATTCGCCACTGACTTGAATAGCCTCATAGAACTATTTGCC
AGTAGAAGGCTGGTTGTCCTGCTTCATGTCAGCAAGACAGCTGGACTCTCACACATGACC
ACTGAGTTTGCTTACATCGAAACTGTTGTATCATTCAAAGTATCTACTGGACATGATTAT
TCCATTCAAATGGATTACAAGCTTCGAGTAGAAGACAGACTTACTCCTCATGATTTTTTC
CAGAATGCTCCTATTGTCAAGGAAGTCTACACCAGCTGTTAACCATTCAACTCTATGAGC
AGAGATTAAATTTTTTCAATATCTGTTCTTATCGTTGACATCAGTTGTTTTTGATTGACC
AACACCTATTCCATCTCTTTATAAATAAAAACAACTCCCTGATGCTTCTTGGAACCACCT
CTCTCTTTTTCAATTCATGTGGTTCAGTCTGACCTAACCTTAGGTTTCATGGGTGGACAT
GTAATTCAAACCTGATCAGTCAGCAAAATCCATCTCCTTGACCATAGTGATTGGTTCAGG
AATGATCATGTGATTCAAGTTGGTCCAGTGATTACTTAATCCTGAGAGTTTTAGTGAACT
GTGTAGGAGAAGCTCAGAGGCTGTTTACTGAGGTTGCTTAGCTCTGTAGGATGAAAAGCT
CAAACCAACAGGGCCTACCATATCAAATAAGCCAGTCAGAGAATGAAGCCAGTGCAGAGG
AAGGCGGAGCCAAATGATGGAGAGACTTAAGTTCTGATGATAATTTTTTGTGCCCCTGGA
TCCAACCGTGCCTGAAGCTAGAATATCCCCTGGACTTTTCAGTTATGTAAACCAATAAAG
ACCCTTTTTTGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTTTAATTTTATCTTTTTTAATACTTGGGACCCTTTCTACTAGGCCTGGAGGA
GTACAGCAGATTGAAAGCATTGCCCATTCTCTCTTCTACAGTAATACAGAGATGAAGCTG
ATTCACCAGGACTCACAGAAATGTACCGATTCAACTGGCAAAAGACATGAACACAAGAAA
ACTTTTCCACTAAACTTAAAATTCGCCACTGACTTGAATAGCCTCATAGAACTATTTGCC
AGTAGAAGGCTGGTTGTCCTGCTTCATGTCAGCAAGACAGCTGGACTCTCACACATGACC
ACTGAGTTTGCTTACATCGAAACTGTTGTATCATTCAAAGTATCTACTGGACATGATTAT
TCCATTCAAATGGATTACAAGCTTCGAGTAGAAGACAGACTTACTCCTCATGATTTTTTC
CAGAATGCTCCTATTGTCAAGGAAGTCTACACCAGCTGTTAACCATTCAACTCTATGAGC
AGAGATTAAATTTTTTCAATATCTGTTCTTATCGTTGACATCAGTTGTTTTTGATTGACC
AACACCTATTCCATCTCTTTATAAATAAAAACAACTCCCTGATGCTTCTTGGAACCACCT
CTCTCTTTTTCAATTCATGTGGTTCAGTCTGACCTAACCTTAGGTTTCATGGGTGGACAT
GTAATTCAAACCTGATCAGTCAGCAAAATCCATCTCCTTGACCATAGTGATTGGTTCAGG
AATGATCATGTGATTCAAGTTGGTCCAGTGATTACTTAATCCTGAGAGTTTTAGTGAACT
GTGTAGGAGAAGCTCAGAGGCTGTTTACTGAGGTTGCTTAGCTCTGTAGGATGAAAAGCT
CAAACCAACAGGGCCTACCATATCAAATAAGCCAGTCAGAGAATGAAGCCAGTGCAGAGG
AAGGCGGAGCCAAATGATGGAGAGACTTAAGTTCTGATGATAATTTTTTGTGCCCCTGGA
TCCAACCGTGCCTGAAGCTAGAATATCCCCTGGACTTTTCAGTTATGTAAACCAATAAAG
ACCCTTTTTTGC

Aligned organism(s): 1 entry(ies)

More info

Aligned organism(s): 1 entry(ies)

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               792-1032, gnl|bosTau2|chr1 (97949155-97948919)

Aligned organism(s): 1 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               792-1032, gnl|bosTau2|chr1 (97949155-97948919)

Expressed library(ies): 12 entry(ies)

More info

Expressed library(ies): 12 entry(ies)

Help | Less info


               
               sag (0.36543)
               

               
               cte (0.29274)
               

               
               mcp (0.170648)
               

               
               mga (0.160205)
               

               
               tbr (0.154178)
               

               
               fat (0.147427)
               

               
               hlv (0.139256)
               

               
               bla (0.124347)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)
               

               
               med (0.116252)
               

               
               spc (0.113366)

Expressed library(ies): 12 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sag (0.36543)
               

               
               cte (0.29274)
               

               
               mcp (0.170648)
               

               
               mga (0.160205)
               

               
               tbr (0.154178)
               

               
               fat (0.147427)
               

               
               hlv (0.139256)
               

               
               bla (0.124347)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)
               

               
               med (0.116252)
               

               
               spc (0.113366)

	sag (0.36543)
	cte (0.29274)
	mcp (0.170648)
	mga (0.160205)
	tbr (0.154178)
	fat (0.147427)
	hlv (0.139256)
	bla (0.124347)
	pgl (0.118483)
	ebs (0.118301)
	med (0.116252)
	spc (0.113366)