Non-Coding RNA Search

Ss1.1-rfat0103_j10.5

Sequence:


               
               TTTCTTAACCAACTTTGTTTTGTGTCAGATCGCTACATACTAAGTAGAACTCATAGCTGG
TTCATATTGACCAGGGTGCTTAATCACTGCTGGTGGACAGGGAGTAAGTTTCTTAGTGCA
CACATATCACAAGCCTTAGAACCTCGGCCGCAGTGTCTCTTATTTCATATTTACCTAAGA
AAGGAATAGGTATAAGAAGCATTTTGTAAGTTGAAGCAGGTTGAAATGAAGTTAACCAGA
TCATGGGATGAAACGTTTTGAGAAAAAAGGTTTTTGTTTCAAAGCCTGTAGCCAGACACA
TACTCATTATTAATGGGAACGAGAAACAGAAGAAGCAAAATCCCCATAGGTAACTCAAAA
GTTTACTTAAACCCATACTAGAAACTTACTTACCGTTTTATGGGATTTATTTAAAGTAGT
GAAAGAGGTCTCATTATTTATTTCCCCTCTGAGTGGACTGGCCTCAAAGCAGGTATTTGA
AAGAAAAAGAAGGGCCCAAGTAATTTATAAATTTTTACCCAATCCCTTAATAACCTAAAC
ATTTCTAGGAGCCTTGGATTGCTCCCCAAAAGGTCTGTCAAAAGGAGATGACTCATTGTC
ACTGAAGAATGCTCCTCACTTTATTTTTTTAAAGGTTAAAGAAACTTTAAAGTTAACTTT
AACTTAAATAGTATTTGCCATTTAGCTCAGACCATTTTAGGAAATAAGCTTCATGGCTGG
TAATTTTAAATTCTGTCTTTCTTGCAGGAAGGATGGTGAAAAGCTAGAATTGGGTGTTTA
AAGTTCAACATGTTACTTTGTAATAGATGTTTAGTAGATTTTCTGCTACCTTGCTGCTAT
GGTTTTCTCTTAAGAGCTACATAATTTAGTTTCATAGACAATTTCATCAGTGTAGAACCT
AATTCAACTTAAAACTGTGTGTTTGGGAAAACTCTCTTACTATTTCACAATAGGCTGACA
ACATTTCTATAGCCAAAAATAGCTAAATACCTCAATCAGTCTCCGAATGTCATTTTGGTA
CTTTGCTGGCCACACAAGCCATTATTCACTAGTATGACTAGTTGTGTCCTGCAGTTTATA
TTTAACTTTCTTTATGTCTGTGGATTTTTTTCCTTCAAAGTTTAATAAATTTATTTTCTT
GGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTCTTAACCAACTTTGTTTTGTGTCAGATCGCTACATACTAAGTAGAACTCATAGCTGG
TTCATATTGACCAGGGTGCTTAATCACTGCTGGTGGACAGGGAGTAAGTTTCTTAGTGCA
CACATATCACAAGCCTTAGAACCTCGGCCGCAGTGTCTCTTATTTCATATTTACCTAAGA
AAGGAATAGGTATAAGAAGCATTTTGTAAGTTGAAGCAGGTTGAAATGAAGTTAACCAGA
TCATGGGATGAAACGTTTTGAGAAAAAAGGTTTTTGTTTCAAAGCCTGTAGCCAGACACA
TACTCATTATTAATGGGAACGAGAAACAGAAGAAGCAAAATCCCCATAGGTAACTCAAAA
GTTTACTTAAACCCATACTAGAAACTTACTTACCGTTTTATGGGATTTATTTAAAGTAGT
GAAAGAGGTCTCATTATTTATTTCCCCTCTGAGTGGACTGGCCTCAAAGCAGGTATTTGA
AAGAAAAAGAAGGGCCCAAGTAATTTATAAATTTTTACCCAATCCCTTAATAACCTAAAC
ATTTCTAGGAGCCTTGGATTGCTCCCCAAAAGGTCTGTCAAAAGGAGATGACTCATTGTC
ACTGAAGAATGCTCCTCACTTTATTTTTTTAAAGGTTAAAGAAACTTTAAAGTTAACTTT
AACTTAAATAGTATTTGCCATTTAGCTCAGACCATTTTAGGAAATAAGCTTCATGGCTGG
TAATTTTAAATTCTGTCTTTCTTGCAGGAAGGATGGTGAAAAGCTAGAATTGGGTGTTTA
AAGTTCAACATGTTACTTTGTAATAGATGTTTAGTAGATTTTCTGCTACCTTGCTGCTAT
GGTTTTCTCTTAAGAGCTACATAATTTAGTTTCATAGACAATTTCATCAGTGTAGAACCT
AATTCAACTTAAAACTGTGTGTTTGGGAAAACTCTCTTACTATTTCACAATAGGCTGACA
ACATTTCTATAGCCAAAAATAGCTAAATACCTCAATCAGTCTCCGAATGTCATTTTGGTA
CTTTGCTGGCCACACAAGCCATTATTCACTAGTATGACTAGTTGTGTCCTGCAGTTTATA
TTTAACTTTCTTTATGTCTGTGGATTTTTTTCCTTCAAAGTTTAATAAATTTATTTTCTT
GGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-1143, gnl|bosTau2|chr20 (18318672-18317491)
               

               
               1-1143, gnl|Hg17|chr5 (42756172-42757683)
               

               
               1-1143, gnl|Mm7|chr15 (3144762-3143618)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1143, gnl|bosTau2|chr20 (18318672-18317491)
               

               
               1-1143, gnl|Hg17|chr5 (42756172-42757683)
               

               
               1-1143, gnl|Mm7|chr15 (3144762-3143618)

Expressed library(ies): 15 entry(ies)

More info

Expressed library(ies): 15 entry(ies)

Help | Less info


               
               fat (0.884564)
               

               
               kid (0.389206)
               

               
               vin (0.332557)
               

               
               spl (0.286369)
               

               
               sug (0.254582)
               

               
               hea (0.204499)
               

               
               aor (0.195274)
               

               
               nje (0.16592)
               

               
               tbr (0.154178)
               

               
               lun (0.150489)
               

               
               isp (0.150376)
               

               
               bfe (0.149858)
               

               
               lnt (0.142308)
               

               
               jca (0.11396)
               

               
               ldo (0.0970026)

Expressed library(ies): 15 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fat (0.884564)
               

               
               kid (0.389206)
               

               
               vin (0.332557)
               

               
               spl (0.286369)
               

               
               sug (0.254582)
               

               
               hea (0.204499)
               

               
               aor (0.195274)
               

               
               nje (0.16592)
               

               
               tbr (0.154178)
               

               
               lun (0.150489)
               

               
               isp (0.150376)
               

               
               bfe (0.149858)
               

               
               lnt (0.142308)
               

               
               jca (0.11396)
               

               
               ldo (0.0970026)

	1-1143, gnl\|bosTau2\|chr20 (18318672-18317491)
	1-1143, gnl\|Hg17\|chr5 (42756172-42757683)
	1-1143, gnl\|Mm7\|chr15 (3144762-3143618)

	fat (0.884564)
	kid (0.389206)
	vin (0.332557)
	spl (0.286369)
	sug (0.254582)
	hea (0.204499)
	aor (0.195274)
	nje (0.16592)
	tbr (0.154178)
	lun (0.150489)
	isp (0.150376)
	bfe (0.149858)
	lnt (0.142308)
	jca (0.11396)
	ldo (0.0970026)