Non-Coding RNA Search

Ss1.1-rfat0104_h11.5

Sequence:


               
               TGACCTCCAAGTATATGTACTATACTGCTACAGAGGCTTCACTCTTCAGTATGTTATTTA
CATTTATACCCCTTGTGAAAAACACAGGTATTTTTTTTAAAGTAGTTTTGGGTGATCTAA
TTTCAGGGGTTGGCCAACTACTCCCTGTGGTCAAATTCAGCCTGCCACCTGTTTTTCTAC
TGCCTGCAAGCTAAGAATGATGTTTATACATTTTTAAAAATTTGGAGGGGGAGAAAAAAC
------------------------------------------------------------
------------------------------------------------------------
------------GTGACACAGACCATATGACCTGCAAAGCTAGCTGGCCCTTTACAAAGC
TCACAGATTCCTGATCTGATGTCCTTGATTCTCTGATCCTTTTATTTCACACCTAAAAAG
CATGCCCTGGAAGTGGCAAGGAATATAGGTTTCTGTGTCTCAATTCATAGCATAGTGATG
ATCAGTTTACTAGAAGAAGGCGTATTTTGGTCATCAAGTGATCTACTTCCACAACAATAT
ATTAAGTAAGTCAGTCAGTTCTGCCCTTTCTGAAGGAGTCTTATGGAGTAACAGTATTTA
TAACCATTTTGCGATTCTATGTGCTTTGTCTCATTCTTTTGCAGTCTGTTTCAGCTGAAA
TAGTCTCAGCTATTGAACCCAATTTACTTTTGAAAGAACTGTGTTTACTGCACATAACTT
TTGACATCACCACTTCCTGAAGACCTTGGTATGAAATGCATGAGAAGCCCTTTTGCTATC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGACCTCCAAGTATATGTACTATACTGCTACAGAGGCTTCACTCTTCAGTATGTTATTTA
CATTTATACCCCTTGTGAAAAACACAGGTATTTTTTTTAAAGTAGTTTTGGGTGATCTAA
TTTCAGGGGTTGGCCAACTACTCCCTGTGGTCAAATTCAGCCTGCCACCTGTTTTTCTAC
TGCCTGCAAGCTAAGAATGATGTTTATACATTTTTAAAAATTTGGAGGGGGAGAAAAAAC
------------------------------------------------------------
------------------------------------------------------------
------------GTGACACAGACCATATGACCTGCAAAGCTAGCTGGCCCTTTACAAAGC
TCACAGATTCCTGATCTGATGTCCTTGATTCTCTGATCCTTTTATTTCACACCTAAAAAG
CATGCCCTGGAAGTGGCAAGGAATATAGGTTTCTGTGTCTCAATTCATAGCATAGTGATG
ATCAGTTTACTAGAAGAAGGCGTATTTTGGTCATCAAGTGATCTACTTCCACAACAATAT
ATTAAGTAAGTCAGTCAGTTCTGCCCTTTCTGAAGGAGTCTTATGGAGTAACAGTATTTA
TAACCATTTTGCGATTCTATGTGCTTTGTCTCATTCTTTTGCAGTCTGTTTCAGCTGAAA
TAGTCTCAGCTATTGAACCCAATTTACTTTTGAAAGAACTGTGTTTACTGCACATAACTT
TTGACATCACCACTTCCTGAAGACCTTGGTATGAAATGCATGAGAAGCCCTTTTGCTATC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               491-598, - strand, RNAz p=0.996193

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               491-598, - strand, RNAz p=0.996193

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               21-228, gnl|bosTau2|chr3 (54764599-54764390)
               

               
               21-228, gnl|Hg17|chr1 (65009271-65009470)
               

               
               21-228, gnl|Mm7|chr4 (100527445-100527639)
               


               
               268-708, gnl|bosTau2|chr3 (54764239-54763784)
               

               
               268-708, gnl|Hg17|chr1 (65009664-65010154)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               21-228, gnl|bosTau2|chr3 (54764599-54764390)
               

               
               21-228, gnl|Hg17|chr1 (65009271-65009470)
               

               
               21-228, gnl|Mm7|chr4 (100527445-100527639)
               


               
               268-708, gnl|bosTau2|chr3 (54764239-54763784)
               

               
               268-708, gnl|Hg17|chr1 (65009664-65010154)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               isp (0.150376)
               

               
               fat (0.147427)
               

               
               lin (0.145603)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               isp (0.150376)
               

               
               fat (0.147427)
               

               
               lin (0.145603)

	21-228, gnl\|bosTau2\|chr3 (54764599-54764390)
	21-228, gnl\|Hg17\|chr1 (65009271-65009470)
	21-228, gnl\|Mm7\|chr4 (100527445-100527639)

	268-708, gnl\|bosTau2\|chr3 (54764239-54763784)
	268-708, gnl\|Hg17\|chr1 (65009664-65010154)