Ss1.1-rfat0104_m18.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TCAGCTGACCTCTAGGAGGGGGGGGGAGGGGATCGGACTTTACCGGCATTTTCTAAAATC TCCAAATTTTGATGGTTGGTTCAAGACTCGGAGGAAGGAAATGACCCAGAAATTGGAGGC ACTCCATCTAGAAGCTCTTTGTGAAGAGGACTTACTTCTCTGGACCCAGGGGGGGGGCAG AATAGAAACTGTAGACCTTGTATTGAAGCTAAAAAATAAGCTGTTGCAGGCTGATCGAGA GCATTTACCTGTGAAACCTGACACTATGGAAAAGTTACGGACACACATAGATGCAATTAT CCTTGCATTGCCAGAGGACCTACAAGGCATATTGCTCAAAACGGGCATGACATGATATTT GCCAGGATTTTCCAGCCAAAAGGATTGTGCACCATGAAGCATACTGACATTTCAACCAGA CGCACAAGCTCTCTCGAGTGGGAAATAGCTGTGGATGCTAGCTACAGGGTTGAAAGACTA TACTGTATAAACAGACCTTTTTAGTGCATTATTTTAAAAAATGGATATCCGTGGTGGTTC CACTTTAATACTGATACACCGAAAGTCATTTCTATATTTTTAATCATGTTTAAAGTGCTC TTATGAGAGACCTGTGGGGCCATCAGTTTAAGTGATTCCAAACTGCAGTGCTGGCATTGC AGATATTTTTTTAAATTGGTGCTGCTTTGCCCAATCATGTTAAAACTCAGGGGGATATAA AAATAACATTCATAAATACACAAAAAAAAATTCACACTGGCAATCTTCTTAAGAAGAAGG AAAAGACTGAACTGTAAAACTGTAATTAGAACTAATTAATGCTTTTGTAGTGCCTTCCGT TGTCCTACATGTTTCACAAAGCCCAGCTCAGCTGTTGGTCTTGAAGCTTTTCTTAACTTG ATTATGATATTCAATTTTTTATAAGGCATTGTTGTGAGTAATCATTTAAAAAATTTTTTT GCCTCATATTATGTTTATTATTAGTGGCATTGGTGTTTTTTTTTCCAATTATCATGTAGG TTTCATTTCATTATTTTCTATACCGTTTTCAGATTTAACCTCATCAGTTTCTCCAAAGAG AAGGCATCTAGTATTAATTATGGAAGGTCTTATTTCCTTTTACCATTTATTAATTGGGCC TGTTTCAATTAATTAGCTTGGCTGTTGTTCAAAGTCATTCTAATTATAAACTTCATTTTA AATTGAACTATTATTTTTTTGGTTGCTCCTGCGGCA------------------------ ------------------------------------------------------------ ------------------------AACTGAACTATTCTTACATCAAAGGTATTCATAAAC ATTTTATGTGATAGTTGTTTGAGTGCTTAAAAGATTGATTTTCACCATTATTTGTGTGGT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TCAGCTGACCTCTAGGAGGGGGGGGGAGGGGATCGGACTTTACCGGCATTTTCTAAAATC TCCAAATTTTGATGGTTGGTTCAAGACTCGGAGGAAGGAAATGACCCAGAAATTGGAGGC ACTCCATCTAGAAGCTCTTTGTGAAGAGGACTTACTTCTCTGGACCCAGGGGGGGGGCAG AATAGAAACTGTAGACCTTGTATTGAAGCTAAAAAATAAGCTGTTGCAGGCTGATCGAGA GCATTTACCTGTGAAACCTGACACTATGGAAAAGTTACGGACACACATAGATGCAATTAT CCTTGCATTGCCAGAGGACCTACAAGGCATATTGCTCAAAACGGGCATGACATGATATTT GCCAGGATTTTCCAGCCAAAAGGATTGTGCACCATGAAGCATACTGACATTTCAACCAGA CGCACAAGCTCTCTCGAGTGGGAAATAGCTGTGGATGCTAGCTACAGGGTTGAAAGACTA TACTGTATAAACAGACCTTTTTAGTGCATTATTTTAAAAAATGGATATCCGTGGTGGTTC CACTTTAATACTGATACACCGAAAGTCATTTCTATATTTTTAATCATGTTTAAAGTGCTC TTATGAGAGACCTGTGGGGCCATCAGTTTAAGTGATTCCAAACTGCAGTGCTGGCATTGC AGATATTTTTTTAAATTGGTGCTGCTTTGCCCAATCATGTTAAAACTCAGGGGGATATAA AAATAACATTCATAAATACACAAAAAAAAATTCACACTGGCAATCTTCTTAAGAAGAAGG AAAAGACTGAACTGTAAAACTGTAATTAGAACTAATTAATGCTTTTGTAGTGCCTTCCGT TGTCCTACATGTTTCACAAAGCCCAGCTCAGCTGTTGGTCTTGAAGCTTTTCTTAACTTG ATTATGATATTCAATTTTTTATAAGGCATTGTTGTGAGTAATCATTTAAAAAATTTTTTT GCCTCATATTATGTTTATTATTAGTGGCATTGGTGTTTTTTTTTCCAATTATCATGTAGG TTTCATTTCATTATTTTCTATACCGTTTTCAGATTTAACCTCATCAGTTTCTCCAAAGAG AAGGCATCTAGTATTAATTATGGAAGGTCTTATTTCCTTTTACCATTTATTAATTGGGCC TGTTTCAATTAATTAGCTTGGCTGTTGTTCAAAGTCATTCTAATTATAAACTTCATTTTA AATTGAACTATTATTTTTTTGGTTGCTCCTGCGGCA------------------------ ------------------------------------------------------------ ------------------------AACTGAACTATTCTTACATCAAAGGTATTCATAAAC ATTTTATGTGATAGTTGTTTGAGTGCTTAAAAGATTGATTTTCACCATTATTTGTGTGGT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 39-685, + strand, RNAz p=0.860094 | |
| 490-600, - strand, RNAz p=0.933535 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 39-685, + strand, RNAz p=0.860094 | |
| 490-600, - strand, RNAz p=0.933535 |
| Aligned organism(s): 37 entry(ies) | More info |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
| 39-149, gnl|bosTau2|chr22 (33442357-33442467) | |
| 39-149, gnl|canFam2|chr20 (35824277-35824145) | |
| 39-149, gnl|danRer3|chrNA (103247779-103247903) | |
| 39-149, gnl|dasNov1|scaffold_70465 (1058-1192) | |
| 39-149, gnl|echTel1|scaffold_159180 (690-556) | |
| 39-149, gnl|fr1|chrUn (266789001-266788868) | |
| 39-149, gnl|galGal2|chr12 (8796782-8796941) | |
| 39-149, gnl|hg17|chr3 (57591171-57591305) | |
| 39-149, gnl|Hg17|chr3 (57591297-57591187) | |
| 39-149, gnl|loxAfr1|scaffold_12322 (5490-5624) | |
| 39-149, gnl|mm7|chr14 (24018207-24018074) | |
| 39-149, gnl|Mm7|chr14 (24018079-24018189) | |
| 39-149, gnl|monDom2|scaffold_5 (2538563-2538699) | |
| 39-149, gnl|oryCun1|scaffold_213349 (92204-92339) | |
| 39-149, gnl|panTro1|chr2 (59313715-59313849) | |
| 39-149, gnl|rheMac2|chr2 (78766859-78766725) | |
| 39-149, gnl|rn3|chr16 (1940088-1939957) | |
| 39-149, gnl|tetNig1|chrUn_random (19099466-19099374) | |
| 39-149, gnl|xenTro1|scaffold_80 (1921356-1921491) | |
| 223-732, gnl|bosTau2|chr22 (33444704-33445215) | |
| 223-732, gnl|canFam2|chr20 (35826635-35826082) | |
| 223-732, gnl|dasNov1|scaffold_193917 (1216-662) | |
| 223-732, gnl|echTel1|scaffold_159180 (3514-2958) | |
| 223-732, gnl|galGal2|chr12 (8794771-8795251) | |
| 223-732, gnl|hg17|chr3 (57588417-57588971) | |
| 223-732, gnl|Hg17|chr3 (57589113-57588589) | |
| 223-732, gnl|loxAfr1|scaffold_12322 (3043-3600) | |
| 223-732, gnl|mm7|chr14 (24020867-24020338) | |
| 223-732, gnl|Mm7|chr14 (24020194-24020691) | |
| 223-732, gnl|monDom2|scaffold_5 (2536231-2536747) | |
| 223-732, gnl|oryCun1|scaffold_213349 (88066-88633) | |
| 223-732, gnl|panTro1|chr2 (59310984-59311538) | |
| 223-732, gnl|rheMac2|chr2 (78769292-78768744) | |
| 223-732, gnl|rn3|chr16 (1942838-1942311) | |
| 742-1196, gnl|bosTau2|chr22 (33445203-33445653) | |
| 742-1196, gnl|Hg17|chr3 (57588601-57587827) | |
| 742-1196, gnl|Mm7|chr14 (24020679-24021108) |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 39-149, gnl|bosTau2|chr22 (33442357-33442467) | |
| 39-149, gnl|canFam2|chr20 (35824277-35824145) | |
| 39-149, gnl|danRer3|chrNA (103247779-103247903) | |
| 39-149, gnl|dasNov1|scaffold_70465 (1058-1192) | |
| 39-149, gnl|echTel1|scaffold_159180 (690-556) | |
| 39-149, gnl|fr1|chrUn (266789001-266788868) | |
| 39-149, gnl|galGal2|chr12 (8796782-8796941) | |
| 39-149, gnl|hg17|chr3 (57591171-57591305) | |
| 39-149, gnl|Hg17|chr3 (57591297-57591187) | |
| 39-149, gnl|loxAfr1|scaffold_12322 (5490-5624) | |
| 39-149, gnl|mm7|chr14 (24018207-24018074) | |
| 39-149, gnl|Mm7|chr14 (24018079-24018189) | |
| 39-149, gnl|monDom2|scaffold_5 (2538563-2538699) | |
| 39-149, gnl|oryCun1|scaffold_213349 (92204-92339) | |
| 39-149, gnl|panTro1|chr2 (59313715-59313849) | |
| 39-149, gnl|rheMac2|chr2 (78766859-78766725) | |
| 39-149, gnl|rn3|chr16 (1940088-1939957) | |
| 39-149, gnl|tetNig1|chrUn_random (19099466-19099374) | |
| 39-149, gnl|xenTro1|scaffold_80 (1921356-1921491) | |
| 223-732, gnl|bosTau2|chr22 (33444704-33445215) | |
| 223-732, gnl|canFam2|chr20 (35826635-35826082) | |
| 223-732, gnl|dasNov1|scaffold_193917 (1216-662) | |
| 223-732, gnl|echTel1|scaffold_159180 (3514-2958) | |
| 223-732, gnl|galGal2|chr12 (8794771-8795251) | |
| 223-732, gnl|hg17|chr3 (57588417-57588971) | |
| 223-732, gnl|Hg17|chr3 (57589113-57588589) | |
| 223-732, gnl|loxAfr1|scaffold_12322 (3043-3600) | |
| 223-732, gnl|mm7|chr14 (24020867-24020338) | |
| 223-732, gnl|Mm7|chr14 (24020194-24020691) | |
| 223-732, gnl|monDom2|scaffold_5 (2536231-2536747) | |
| 223-732, gnl|oryCun1|scaffold_213349 (88066-88633) | |
| 223-732, gnl|panTro1|chr2 (59310984-59311538) | |
| 223-732, gnl|rheMac2|chr2 (78769292-78768744) | |
| 223-732, gnl|rn3|chr16 (1942838-1942311) | |
| 742-1196, gnl|bosTau2|chr22 (33445203-33445653) | |
| 742-1196, gnl|Hg17|chr3 (57588601-57587827) | |
| 742-1196, gnl|Mm7|chr14 (24020679-24021108) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ton (0.1755) | |
| fat (0.147427) |